PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HD-ZIP

Protein Properties

Length: 306aa MW: 33636 Da PI: 4.4475

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g35850.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.4e-19	76	130	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t+eq++ Le+ F +++++ e+++eLA++lg+ rqV vWFqNrRa++k+ Bradi3g35850.1.p 76 KKRRLTAEQVQMLERSFGEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKN 130 5678*************************************************95 PP
2	HD-ZIP_I/II	130.1	8.7e-42	75	166	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++eqv++LE+sF ee+kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d+++Lk+aydal+++++ L +++++Lr+++ Bradi3g35850.1.p 75 EKKRRLTAEQVQMLERSFGEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKNKQLEQDFDRLKAAYDALAADHHGLLSDNDRLRAQVI 166 69**************************************************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.67E-18	70	133	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.204	71	131	IPR001356	Homeobox domain
SMART	SM00389	1.4E-18	74	135	IPR001356	Homeobox domain
CDD	cd00086	2.50E-18	76	132	No hit	No description
Pfam	PF00046	1.0E-16	76	130	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.2E-21	77	138	IPR009057	Homeodomain-like
PRINTS	PR00031	5.2E-6	102	111	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	106	129	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.2E-6	111	127	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.3E-15	131	172	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MDPGRVVFDS GLARMAAPGG GRAQMLLFGG ASNTGGFFRG VPGMDDERVV SNKRPFFTTH 60 EELLEEEYYD EQAQEKKRRL TAEQVQMLER SFGEENKLEP ERKTELARRL GMAPRQVAVW 120 FQNRRARWKN KQLEQDFDRL KAAYDALAAD HHGLLSDNDR LRAQVISLTD KLEGNETSPS 180 ATATMAQEVD QPDDHTVGAT ATVPAQQLKE DILSSGTNDS SSPVVINIAE VTNHSGESAY 240 IARDYGCTGQ YGVGALSSEE EDGGAVSDEG CSFHLPDAIL GPGLVHNVTE EEVQLGNWTS 300 WFWNE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	131	RRARWKNKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g35850.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP097853	1e-151	FP097853.1 Phyllostachys edulis cDNA clone: bphyem205k19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235125.1	0.0	homeobox-leucine zipper protein HOX5
Swissprot	Q6ZA74	1e-118	HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
TrEMBL	I1I717	0.0	I1I717_BRADI; Uncharacterized protein
STRING	BRADI3G35850.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2609	38	87
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-50	homeobox 1

Link Out ? help Back to Top
Phytozome	Bradi3g35850.1.p
Entrez Gene	100841656

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]