PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g34670.6.p
Common NameBRADI_3g34670, LOC100829506
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 417aa    MW: 46632 Da    PI: 8.3512
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g34670.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.38.2e-152462341
               TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41
                      +k+C+Ck+skClk+YC+Cfa+g++C+++C+C++C+N+ +
  Bradi3g34670.6.p 24 RKNCKCKNSKCLKLYCDCFASGRYCNDDCNCKNCCNDVS 62
                      799*********************************876 PP
2TCR512.9e-16109149141
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       k++kgC+Ck+s+ClkkYCeCf++++ Cse+CkC+dCkN e+
  Bradi3g34670.6.p 109 KHMKGCQCKRSECLKKYCECFQSNVLCSENCKCTDCKNYES 149
                       589***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-112263IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.46823149IPR005172CRC domain
PfamPF036384.1E-102560IPR005172CRC domain
SMARTSM011143.1E-17109150IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.7E-12112147IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MRMLNSRYPW SETSSESING TPRRKNCKCK NSKCLKLYCD CFASGRYCND DCNCKNCCND  60
VSHETARQDA INAVMERNPV AFMPKIGNIP RHAAQNREYR AAEGPRVGKH MKGCQCKRSE  120
CLKKYCECFQ SNVLCSENCK CTDCKNYESS EDMKEMRRMT QQHGVYVHHV QNLALKGMIG  180
PSAVLPRAAE KFSGLSVASL GRDQPINNND SSQVLSPLLT SVPTEDTESS VRLGRHGVTY  240
RTLLADIIQI EDVNVLCKVL VLVSRQAAGA FLDSGFKENT NIKKLDRAES HIPSTNHDRK  300
AVQKQHDEQL CSLGNSLIAV PLSEGRAGMP RSDPSDTWKD NRRSVSPGTQ ALMCNEQDMF  360
VHTSSVAGAI LSTTKENLSE IYIEQEKRVL TNLLDFLREL AKSGRLQEEK RSLRCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-272416011134Protein lin-54 homolog
5fd3_B4e-272416011134Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g34670.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235073.10.0protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755713.10.0protein tesmin/TSO1-like CXC 7 isoform X1
TrEMBLA0A2K2D1510.0A0A2K2D151_BRADI; Uncharacterized protein
STRINGBRADI3G34670.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.19e-55Tesmin/TSO1-like CXC domain-containing protein