PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g34670.1.p
Common NameBRADI_3g34670, LOC100829506
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CPP
Protein Properties Length: 564aa    MW: 62454.7 Da    PI: 8.8212
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g34670.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.81.2e-14171209341
               TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       +k+C+Ck+skClk+YC+Cfa+g++C+++C+C++C+N+ +
  Bradi3g34670.1.p 171 RKNCKCKNSKCLKLYCDCFASGRYCNDDCNCKNCCNDVS 209
                       799*********************************876 PP
2TCR50.44.4e-16256296141
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       k++kgC+Ck+s+ClkkYCeCf++++ Cse+CkC+dCkN e+
  Bradi3g34670.1.p 256 KHMKGCQCKRSECLKKYCECFQSNVLCSENCKCTDCKNYES 296
                       589***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.7E-11169210IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.468170296IPR005172CRC domain
PfamPF036386.1E-10172207IPR005172CRC domain
SMARTSM011143.1E-17256297IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.6E-12259294IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MDKPPNHPHD SVQLDFASVF YAGKPEIAAT AAALSHALGP PRQPPHRQLM PLKVKVQSSL  60
PPWPPVLWPT AIAGKHPMPF PTPPPAKKLQ VRRSPPVLPQ DLPLSAAKLP LPGVQVQRPL  120
QQASPFLTQL LPKMEVPILL PMHATSVGVM LNSRYPWSET SSESINGTPR RKNCKCKNSK  180
CLKLYCDCFA SGRYCNDDCN CKNCCNDVSH ETARQDAINA VMERNPVAFM PKIGNIPRHA  240
AQNREYRAAE GPRVGKHMKG CQCKRSECLK KYCECFQSNV LCSENCKCTD CKNYESSEDM  300
KEMRRMTQQH GVYVHHVQNL ALKGMIGPSA VLPRAAEKFS GLSVASLGRD QPINNNDSSQ  360
VLSPLLTSVP TEDTESSVRL GRHGVTYRTL LADIIQIEDV NVLCKVLVLV SRQAAGAFLD  420
SGFKENTNIK KLDRAESHIP STNHDRKAVQ KQHDEQLCSL GNSLIAVPLS EGRAGMPRSD  480
PSDTWKDNRR SVSPGTQALM CNEQDMFVHT SSVAGAILST TKENLSEIYI EQEKRVLTNL  540
LDFLRELAKS GRLQEEKRSL RCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-2617130311130Protein lin-54 homolog
5fd3_B3e-2617130311130Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g34670.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235073.10.0protein tesmin/TSO1-like CXC 7 isoform X1
RefseqXP_014755713.10.0protein tesmin/TSO1-like CXC 7 isoform X1
TrEMBLI1I6L50.0I1I6L5_BRADI; Uncharacterized protein
STRINGBRADI3G34670.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138462025
Representative plantOGRP14691745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.18e-55Tesmin/TSO1-like CXC domain-containing protein