PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g34567.3.p
Common NameLOC100827689
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 350aa    MW: 38185.3 Da    PI: 6.7502
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g34567.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.63.8e-31179237259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY+++Hnh+
  Bradi3g34567.3.p 179 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSDHNHP 237
                       699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-32170239IPR003657WRKY domain
PROSITE profilePS5081133.109173239IPR003657WRKY domain
SuperFamilySSF1182901.29E-26175239IPR003657WRKY domain
SMARTSM007749.4E-38178238IPR003657WRKY domain
PfamPF031066.3E-26180237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MIADLFWLSP GEQGDLSDVV RASLHPQPEP EHYYQQLPAA AASFSYLQQP EELAEGGLQL  60
HGDHGQLGIM TDDASSKRPS SSDHKQVISP DYSLAEMIHG MSPPQRPPGM ERLQEAAGDD  120
VVPERSDRMR QHMLSMDHHP ARVPAASKPR KSQTKRVVCI PAPTAASGRQ STSGEVVPSD  180
LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC PARKQVERSR TDPNMLVITY TSDHNHPWPT  240
QRNALAGSTR LSSSASAIAA AAKNTSSSSS SSLPTAAQGP SRNSDSINNN DPAAAAAHHR  300
QLKQEDDLDL FADMDSLNIL SSITKTHEED SKQQQQLFDP FSSCFFDCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-25151240280Disease resistance protein RRS1
5w3x_D6e-25151240280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g34567.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9546104e-95KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572136.10.0probable WRKY transcription factor 29 isoform X1
TrEMBLI1I6K10.0I1I6K1_BRADI; Uncharacterized protein
STRINGBRADI3G34567.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-55WRKY DNA-binding protein 35