PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g34410.1.p
Common NameBRADI_3g34410, LOC100840138
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 889aa    MW: 95760.7 Da    PI: 6.0997
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g34410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-20126181156
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Bradi3g34410.1.p 126 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 181
                       688999***********************************************998 PP
2START119.54.6e-383626065206
                       HHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.........................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS
             START   5 eaaqelvkkalaeepgWvkssesengdevlqkfeeskv........................dsgealrasgvvdmvlallveellddkeqWd 73 
                       +aa+ l ++  a++p+W + +    + ev+   e ++v                         ++e  r+ +vv+m++ +lv  +ld + +W 
  Bradi3g34410.1.p 362 TAAEHLARMCRAGDPLWARRV-AGASGEVMDAAEHARVfswpvvdagnkqqqqgdlaaasaaLRTEGTRDGAVVIMNSITLVDAFLDAN-KWM 452
                       566666666666666666666.34444444444444445555555566666666666666667888889999*****************.*** PP

                       TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEE.....EEE-TTS--.-TTSEE-EE CS
             START  74 etla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdv.....SvdseqkppesssvvRael 147
                       e ++    ka t++vi +g        g l lm+ae q+lsplvp R++vf Ry+     +g+w ivd       +d  q+++++s vvR+++
  Bradi3g34410.1.p 453 ELFPsivsKARTIQVIHNGaasghlasGSLILMQAEVQFLSPLVPaREVVFFRYCVHnADEGSWSIVDFpadgfQDDLLQQQQQTSAVVRCRR 545
                       *********************************************************9999******972222245566666669******** PP

                       SSEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
             START 148 lpSgiliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                       +pSg++i++ +ng+s+v+wveh+++ g     + +++  v  g+a+ga +wva lqrqce+
  Bradi3g34410.1.p 546 RPSGCIIQDAPNGYSRVVWVEHMEVVGDEKplQPVFKDHVAGGAAFGATRWVAVLQRQCER 606
                       ************************98865448***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-20110184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.5E-22112177IPR009057Homeodomain-like
PROSITE profilePS5007117.022123183IPR001356Homeobox domain
SMARTSM003891.1E-19124187IPR001356Homeobox domain
CDDcd000867.07E-19126184No hitNo description
PfamPF000463.7E-18126181IPR001356Homeobox domain
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
PROSITE profilePS5084841.29349609IPR002913START domain
CDDcd088756.48E-94353605No hitNo description
SuperFamilySSF559612.47E-25356608No hitNo description
SMARTSM002341.2E-18379606IPR002913START domain
PfamPF018525.1E-31423606IPR002913START domain
SuperFamilySSF559617.42E-17634867No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MFGDCQVLSS MAAMAGGSSS ADALFASPLM QPNPGGFNMG MAPFHHHHFS TTLIPKEEGV  60
MSMGKDDDMD LTEMDMAELS GGSGSAHLDG LLAFDDDDHK PHHNEPNMAS TGAANNGNNA  120
ANGGKKKRYH RHTAHQIQQM EALFKECPHP DDKQRLKLSQ ELGLKPRQVK FWFQNRRTQM  180
KAQQDRADNV ILRAENESLK TDNFRLQAAL RNVVCPTCGH PGAVLADVPY EEQTLRVENA  240
RLKDELDRLA SIATRYGGGR QQQQPGGGMS SLLGCMSAMS APMLMPPQQL DLDMSVYSRH  300
FADHQQHGGG AMADHHLMTS VPQLQMADHG HQHPGVSAVS SYMAPVVVQE QDRQLVLDLA  360
ATAAEHLARM CRAGDPLWAR RVAGASGEVM DAAEHARVFS WPVVDAGNKQ QQQGDLAAAS  420
AALRTEGTRD GAVVIMNSIT LVDAFLDANK WMELFPSIVS KARTIQVIHN GAASGHLASG  480
SLILMQAEVQ FLSPLVPARE VVFFRYCVHN ADEGSWSIVD FPADGFQDDL LQQQQQTSAV  540
VRCRRRPSGC IIQDAPNGYS RVVWVEHMEV VGDEKPLQPV FKDHVAGGAA FGATRWVAVL  600
QRQCERLASE LARNIADQGV IRTPEARTNM MRLSQRMITA FCANISASGS QSWTALSDST  660
EDTIRVTTRK NTEPGQPSGV ILTAVSTSWL PFSHQQVFEL LADEQQRCQL EIMSNGSSLQ  720
EVAHIANGSH PRNCISLLRI NAASNSSQNV ELLLQETSTH PDGGSLVVFA TVDVDAIQVT  780
MSGEDPSYIP LLPLGFAIFP ATNPSPSATR ANTGDGESTP GNADEPANGC LLTVGMQVLA  840
SAVPSAKLNL SSVTAINSHI CNTIHQITTA LKGAGASRSE PVSAGSDQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g34410.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235052.10.0homeobox-leucine zipper protein ROC3
RefseqXP_024318297.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLI1I6I00.0I1I6I0_BRADI; Uncharacterized protein
STRINGBRADI3G34410.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78463441
Representative plantOGRP94751113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7