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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g34410.1.p | ||||||||
Common Name | BRADI_3g34410, LOC100840138 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 889aa MW: 95760.7 Da PI: 6.0997 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.6 | 1.4e-20 | 126 | 181 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k Bradi3g34410.1.p 126 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 181 688999***********************************************998 PP | |||||||
2 | START | 119.5 | 4.6e-38 | 362 | 606 | 5 | 206 |
HHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.........................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS START 5 eaaqelvkkalaeepgWvkssesengdevlqkfeeskv........................dsgealrasgvvdmvlallveellddkeqWd 73 +aa+ l ++ a++p+W + + + ev+ e ++v ++e r+ +vv+m++ +lv +ld + +W Bradi3g34410.1.p 362 TAAEHLARMCRAGDPLWARRV-AGASGEVMDAAEHARVfswpvvdagnkqqqqgdlaaasaaLRTEGTRDGAVVIMNSITLVDAFLDAN-KWM 452 566666666666666666666.34444444444444445555555566666666666666667888889999*****************.*** PP TT-S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEE.....EEE-TTS--.-TTSEE-EE CS START 74 etla....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdv.....SvdseqkppesssvvRael 147 e ++ ka t++vi +g g l lm+ae q+lsplvp R++vf Ry+ +g+w ivd +d q+++++s vvR+++ Bradi3g34410.1.p 453 ELFPsivsKARTIQVIHNGaasghlasGSLILMQAEVQFLSPLVPaREVVFFRYCVHnADEGSWSIVDFpadgfQDDLLQQQQQTSAVVRCRR 545 *********************************************************9999******972222245566666669******** PP SSEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 148 lpSgiliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206 +pSg++i++ +ng+s+v+wveh+++ g + +++ v g+a+ga +wva lqrqce+ Bradi3g34410.1.p 546 RPSGCIIQDAPNGYSRVVWVEHMEVVGDEKplQPVFKDHVAGGAAFGATRWVAVLQRQCER 606 ************************98865448***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.68E-20 | 110 | 184 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.5E-22 | 112 | 177 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.022 | 123 | 183 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-19 | 124 | 187 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.07E-19 | 126 | 184 | No hit | No description |
Pfam | PF00046 | 3.7E-18 | 126 | 181 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 158 | 181 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.29 | 349 | 609 | IPR002913 | START domain |
CDD | cd08875 | 6.48E-94 | 353 | 605 | No hit | No description |
SuperFamily | SSF55961 | 2.47E-25 | 356 | 608 | No hit | No description |
SMART | SM00234 | 1.2E-18 | 379 | 606 | IPR002913 | START domain |
Pfam | PF01852 | 5.1E-31 | 423 | 606 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.42E-17 | 634 | 867 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 889 aa Download sequence Send to blast |
MFGDCQVLSS MAAMAGGSSS ADALFASPLM QPNPGGFNMG MAPFHHHHFS TTLIPKEEGV 60 MSMGKDDDMD LTEMDMAELS GGSGSAHLDG LLAFDDDDHK PHHNEPNMAS TGAANNGNNA 120 ANGGKKKRYH RHTAHQIQQM EALFKECPHP DDKQRLKLSQ ELGLKPRQVK FWFQNRRTQM 180 KAQQDRADNV ILRAENESLK TDNFRLQAAL RNVVCPTCGH PGAVLADVPY EEQTLRVENA 240 RLKDELDRLA SIATRYGGGR QQQQPGGGMS SLLGCMSAMS APMLMPPQQL DLDMSVYSRH 300 FADHQQHGGG AMADHHLMTS VPQLQMADHG HQHPGVSAVS SYMAPVVVQE QDRQLVLDLA 360 ATAAEHLARM CRAGDPLWAR RVAGASGEVM DAAEHARVFS WPVVDAGNKQ QQQGDLAAAS 420 AALRTEGTRD GAVVIMNSIT LVDAFLDANK WMELFPSIVS KARTIQVIHN GAASGHLASG 480 SLILMQAEVQ FLSPLVPARE VVFFRYCVHN ADEGSWSIVD FPADGFQDDL LQQQQQTSAV 540 VRCRRRPSGC IIQDAPNGYS RVVWVEHMEV VGDEKPLQPV FKDHVAGGAA FGATRWVAVL 600 QRQCERLASE LARNIADQGV IRTPEARTNM MRLSQRMITA FCANISASGS QSWTALSDST 660 EDTIRVTTRK NTEPGQPSGV ILTAVSTSWL PFSHQQVFEL LADEQQRCQL EIMSNGSSLQ 720 EVAHIANGSH PRNCISLLRI NAASNSSQNV ELLLQETSTH PDGGSLVVFA TVDVDAIQVT 780 MSGEDPSYIP LLPLGFAIFP ATNPSPSATR ANTGDGESTP GNADEPANGC LLTVGMQVLA 840 SAVPSAKLNL SSVTAINSHI CNTIHQITTA LKGAGASRSE PVSAGSDQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g34410.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235052.1 | 0.0 | homeobox-leucine zipper protein ROC3 | ||||
Refseq | XP_024318297.1 | 0.0 | homeobox-leucine zipper protein ROC3 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | I1I6I0 | 0.0 | I1I6I0_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G34410.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7846 | 34 | 41 |
Representative plant | OGRP9475 | 11 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g34410.1.p |
Entrez Gene | 100840138 |