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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Bradi3g33410.1.p |
| Common Name | BRADI_3g33410, LOC100830219 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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| Family |
HD-ZIP |
| Protein Properties |
Length: 273aa MW: 29061.8 Da PI: 10.2407 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bradi3g33410.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60 | 3.7e-19 | 124 | 178 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Le+ F+++++++ ++++ LA++lgL rqV vWFqNrRa+ k
Bradi3g33410.1.p 124 RKKLRLSKDQSAVLEDSFNQHSTLNPKQKAALARQLGLRPRQVEVWFQNRRARTK 178
788899***********************************************98 PP
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| 2 | HD-ZIP_I/II | 127.8 | 4.7e-41 | 124 | 211 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
+kk+rlsk+q+++LE+sF+++++L+p++K++lar+Lgl+prqv+vWFqnrRARtk+kq+E+d+eaL+r++dal+een+rL +ev++L+
Bradi3g33410.1.p 124 RKKLRLSKDQSAVLEDSFNQHSTLNPKQKAALARQLGLRPRQVEVWFQNRRARTKLKQTEVDCEALRRRCDALTEENRRLLREVQALK 211
69************************************************************************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MEMTVVNGRD HLGLGLGLSL GIAGTTSSVA APQRALTGAA PTPGQKTRTA SACHEMPLFL 60
RGIDVNRAPD AGHEEEEPGA SSPDSTLSTL SGKRGRSAAG AGGREQERVS DDDEDSGSGA 120
GGSRKKLRLS KDQSAVLEDS FNQHSTLNPK QKAALARQLG LRPRQVEVWF QNRRARTKLK 180
QTEVDCEALR RRCDALTEEN RRLLREVQAL KLPLPHPQLY MRAPPLTMCP SCERVAPSGK 240
PAVAGNSTAL GSGPWGPGPV RPVFVDRPAQ RA*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 122 | 128 | SRKKLRL |
| 2 | 172 | 180 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:10934011, ECO:0000269|PubMed:9076993}. |
| UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:9076993}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10732669}. |
| UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10934011}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK366966 | 1e-131 | AK366966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2049C06. |
| GenBank | AK368549 | 1e-131 | AK368549.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075M23. |
| Publications
? help Back to Top |
- Scarpella E,Boot KJ,Rueb S,Meijer AH
The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition.
Plant Physiol., 2002. 130(3): p. 1349-60
[PMID:12428000] - Scarpella E,Rueb S,Meijer AH
The RADICLELESS1 gene is required for vascular pattern formation in rice.
Development, 2003. 130(4): p. 645-58
[PMID:12505996] - Rice Chromosome 10 Sequencing Consortium
In-depth view of structure, activity, and evolution of rice chromosome 10.
Science, 2003. 300(5625): p. 1566-9
[PMID:12791992] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Scarpella E,Simons EJ,Meijer AH
Multiple regulatory elements contribute to the vascular-specific expression of the rice HD-Zip gene Oshox1 in Arabidopsis.
Plant Cell Physiol., 2005. 46(8): p. 1400-10
[PMID:15964905] - Meijer AH,Ouwerkerk PB,Hoge JH
Vectors for transcription factor cloning and target site identification by means of genetic selection in yeast.
Yeast, 1998. 14(15): p. 1407-15
[PMID:9848232]
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