PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g26920.6.p | ||||||||
Common Name | BRADI_3g26920, LOC100828307 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HSF | ||||||||
Protein Properties | Length: 357aa MW: 40236 Da PI: 4.9401 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 108.2 | 6.1e-34 | 40 | 131 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y+++ d+++++++sws gnsfvv+d++ fa+ +Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll Bradi3g26920.6.p 40 FLTKTYDLVGDPSTDQVVSWSPAGNSFVVWDPHVFADVLLPRLFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLL 123 9****************************************************************999.........**************** PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 + ikr+k Bradi3g26920.6.p 124 KMIKRRKP 131 *****985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.5E-35 | 36 | 129 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.2E-60 | 36 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.6E-38 | 36 | 129 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.1E-31 | 40 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-19 | 40 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-19 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 79 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.9E-19 | 91 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MDPVAGGIVK EELLEQDGGV GAAGLPRPME GLHEAGPPPF LTKTYDLVGD PSTDQVVSWS 60 PAGNSFVVWD PHVFADVLLP RLFKHSNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQR 120 HLLKMIKRRK PPSNLPPSQQ QALASCLEVG EFGHEEEIDR LKRDKNILIT EVVKLRQEQQ 180 TTKGHVQAME ERLRTAEQKQ AQMMGFLARA MRNPRFFQQL VQQQDKRKEL EDAISKKRRR 240 PVDHVPFYGP GIASQNEQLD SQFLFDSGVL GELSEPGMPG LENLAHNIQE LGKSTADEEN 300 RDQASGLGEL NNEFWAELFD DDYRDGSGQS ELEGRRPEDI DELAQQLGYL SSTSPR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-27 | 19 | 129 | 6 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-27 | 19 | 129 | 6 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-27 | 19 | 129 | 6 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 128 | LKMIKRR |
2 | 225 | 239 | KRKELEDAISKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00371 | DAP | Transfer from AT3G22830 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g26920.6.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358460 | 0.0 | AK358460.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1077C17. | |||
GenBank | AK363263 | 0.0 | AK363263.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013N08. | |||
GenBank | HM446025 | 0.0 | HM446025.1 Hordeum vulgare subsp. vulgare heat shock factor A2c (HsfA2c) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010234740.1 | 0.0 | heat stress transcription factor A-2c | ||||
Swissprot | Q338B0 | 0.0 | HFA2C_ORYSJ; Heat stress transcription factor A-2c | ||||
TrEMBL | I1I424 | 0.0 | I1I424_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G26920.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-116 | heat shock transcription factor A6B |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g26920.6.p |
Entrez Gene | 100828307 |
Publications ? help Back to Top | |||
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