PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g26690.1.p
Common NameBRADI_3g26690, LOC100835424
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 513aa    MW: 56240.6 Da    PI: 6.8048
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g26690.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.96.9e-083133501954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp++ e+  LA++ +Lt  qV++WF N R +
  Bradi3g26690.1.p 313 FEHflHPYPKEPEKLMLARQASLTRGQVSNWFINARVR 350
                       554458******************************88 PP
2BELL85.46.8e-28177248172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       erqel++k + L  ll++V++rY+ y +++++v+s  +a+ag g+a+pYt++Al++iSrhFr+L+daia q+
  Bradi3g26690.1.p 177 ERQELENKATALQGLLDQVEQRYRGYEHEMRAVASWLDAAAGRGTARPYTAVALRTISRHFRSLRDAIAAQL 248
                       79*******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-33104246IPR006563POX domain
PfamPF075265.9E-37111245IPR006563POX domain
PROSITE profilePS5007111.386291354IPR001356Homeobox domain
CDDcd000862.39E-9294355No hitNo description
SMARTSM003894.8E-7294358IPR001356Homeobox domain
SuperFamilySSF466895.13E-16296361IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-26297360IPR009057Homeodomain-like
PfamPF059203.0E-15311350IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MATFFSAPGR HKDIAGGGGD MPFHHYPGSS STAGLAPIPA TAAQQGDAQN ELAFMCAAEE  60
SQIETQHHQM MMQRSQAMQR RHGLLSLSLA TQVQASLYPH FSPTGVASRG SSRYLKAARD  120
LLDELVSVQD AGATPTRKPD KNRSHSSGDA AGNDDDRKDP AVNSSPAGEE PSPSPSERQE  180
LENKATALQG LLDQVEQRYR GYEHEMRAVA SWLDAAAGRG TARPYTAVAL RTISRHFRSL  240
RDAIAAQLRS ARRSLGEPPP DVHGGIHRLR YIDQRMRRQQ LGFGCVIQQQ HAAWRPQRGL  300
PEPAVSVLRA WLFEHFLHPY PKEPEKLMLA RQASLTRGQV SNWFINARVR LWKPMIEEMY  360
REEFGEEIME ANSSSEVKGK DEPEPEPARA LEDLQSPSST MQGVNPFKST ATGLDDNAAV  420
YSSIEGLRLH QRQRQHAYDT GLLHDGAGER FLDLGGSGLT LGLHGRHDGV TLVGLGSAEQ  480
AGMDAGAFEY VDGSDDRQRF GSSSQLLHNF VT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-15300358563Homeobox protein Meis2
4xrm_B1e-15300358563Homeobox protein Meis2
4xrs_A1e-15300357158Homeobox protein Meis1
4xrs_B1e-15300357158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g26690.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571779.10.0BEL1-like homeodomain protein 7
TrEMBLI1I3Z20.0I1I3Z2_BRADI; Uncharacterized protein
STRINGBRADI3G26690.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5017622
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.22e-79BEL1-like homeodomain 6