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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g24210.3.p | ||||||||
Common Name | BRADI_3g24210, LOC100831355 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 542aa MW: 60381.1 Da PI: 5.8482 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 427.6 | 9.7e-131 | 172 | 540 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 +e++++c +av+++d +++ l+++l +l+s +gdpmqRl ay++e+L arl++s+s++yk+l++++ + se +++++l++e++P++kf+ Bradi3g24210.3.p 172 KEVIIACGKAVAENDVFATELLISELGQLVSVSGDPMQRLGAYMLEGLVARLSSSGSKIYKSLRCKQPT---GSELMSYMSLLYEICPFYKFG 261 6889****************************************************************9...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 ++ aN aI ea++ge+ vHiiDf+i qG QW++ +qaLa+Rp+gpp lRiTg+++++s + l +g rL k+ +++g+pfefn+ + + Bradi3g24210.3.p 262 YMSANGAIAEAIKGENFVHIIDFQIAQGSQWVTVIQALAARPGGPPCLRITGIDDSDSIyaRGGGLDIVGTRLYKVSRACGLPFEFNA-IPAA 353 *******************************************************888799999************************.6999 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 ++++le+L+++pgE+++Vn+++qlh+++desvs+e++rd++L+++kslsP+vv++veqe+++n+++F+ r le+l+yy+a+f+s++a lpr+ Bradi3g24210.3.p 354 SHEVHLEHLDIRPGEVIVVNFAYQLHHTPDESVSMENHRDRILRMIKSLSPRVVTLVEQESNTNTAPFFPRYLETLDYYTAMFESIDAALPRD 446 9******************************************************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 ++ r++ E+++++r+ivn++acega+r+erhe ++kW++r+ +aGF+++pls+ +++++k+ll ++ + yr+ee++g l+lgWk+r Lv+ S Bradi3g24210.3.p 447 DKRRMSAEQHCVARDIVNLIACEGADRIERHEVFGKWKARFAMAGFRQYPLSSVVNNTIKTLLDSYN-NYYRLEERDGVLYLGWKNRVLVVSS 538 *******************************************************************.55*********************** PP GRAS 372 aW 373 aW Bradi3g24210.3.p 539 AW 540 ** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.513 | 145 | 522 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-128 | 172 | 540 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004871 | Molecular Function | signal transducer activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 542 aa Download sequence Send to blast |
MWAKASDHTY RRSDDQRMAY YNNSVPSREN GRFYVAQSHI DLHYTSSDDG SQKIRSNPQV 60 FEPQYCTLES SSGNGVYPTQ SSTSSHSISP ISGSPLSQHD SHSDHIYGSP PSASCVTEVA 120 DLQVKLKELE DAILGPELDI TSDSPESSLQ AINPLKPDNW RQLLGIYTGD LKEVIIACGK 180 AVAENDVFAT ELLISELGQL VSVSGDPMQR LGAYMLEGLV ARLSSSGSKI YKSLRCKQPT 240 GSELMSYMSL LYEICPFYKF GYMSANGAIA EAIKGENFVH IIDFQIAQGS QWVTVIQALA 300 ARPGGPPCLR ITGIDDSDSI YARGGGLDIV GTRLYKVSRA CGLPFEFNAI PAASHEVHLE 360 HLDIRPGEVI VVNFAYQLHH TPDESVSMEN HRDRILRMIK SLSPRVVTLV EQESNTNTAP 420 FFPRYLETLD YYTAMFESID AALPRDDKRR MSAEQHCVAR DIVNLIACEG ADRIERHEVF 480 GKWKARFAMA GFRQYPLSSV VNNTIKTLLD SYNNYYRLEE RDGVLYLGWK NRVLVVSSAW 540 W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-57 | 175 | 540 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g24210.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573869.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_010234693.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_014756863.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_024317186.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | I1I3Q2 | 0.0 | I1I3Q2_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G24210.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g24210.3.p |
Entrez Gene | 100831355 |
Publications ? help Back to Top | |||
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