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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g23800.2.p | ||||||||
Common Name | BRADI_3g23800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CAMTA | ||||||||
Protein Properties | Length: 982aa MW: 108870 Da PI: 6.224 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 132.4 | 1.7e-41 | 16 | 98 | 36 | 118 |
CG-1 36 sgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 gsl+L++rk++ryfrkD ++w+kkkdgktv+E+he+LK g+++vl+cyYah+e+n +fqrr+yw+Lee++ +ivlvhyle+k Bradi3g23800.2.p 16 GGSLFLFDRKVLRYFRKDAHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEDNGNFQRRTYWMLEEDFMHIVLVHYLETK 98 59******************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 59.468 | 1 | 103 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.7E-42 | 1 | 98 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.3E-34 | 16 | 96 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 3.7E-5 | 396 | 483 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 2.6E-15 | 397 | 483 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 1.3E-5 | 397 | 476 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 4.04E-16 | 590 | 693 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.47E-13 | 593 | 691 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 7.4E-17 | 593 | 695 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.449 | 599 | 693 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.013 | 632 | 661 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 8.736 | 632 | 664 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1800 | 671 | 700 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 9.03E-8 | 793 | 845 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.35 | 794 | 816 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.224 | 795 | 824 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.026 | 796 | 815 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 817 | 839 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.56 | 818 | 842 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.9E-4 | 820 | 839 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 982 aa Download sequence Send to blast |
MAAPEARRFA VVPHLGGSLF LFDRKVLRYF RKDAHNWRKK KDGKTVKEAH ERLKSGSIDV 60 LHCYYAHGED NGNFQRRTYW MLEEDFMHIV LVHYLETKGG KSSRARGDSD MLQAAAADSP 120 LSQIPSQTIE GESSLSGQAS EYEETESDIY SGGAGYDSFT QMQQLQNGIG PMIHTSINSS 180 YAPASSIGAY QGQQHAMAHN TNFYSSSHDN SSVVPNDSSL GLVMSGRESQ TDLSSWNEMM 240 RSDRCSIQMP RQLPVPSEQG TSAEGVGVEY LTFDEVYFDG LGLNDISAAG ADGESSWQYP 300 SAIGDLSAME NNFPQNDRPL EAVISQPFLK TKSSNLSDIL KDSFKKSDSF TRWMSKELPD 360 VEDSQIQSSS GAYWNTEEAL DQFTVAPMLS QDQLFSIVDF SPSWTYAVSK TKVFVTGRFL 420 NANEATERCK WSCMFGEVEV PAEISADGMT LHCYSPPHKP GRVPFYITCS NRLACSEVRE 480 FEFLASDPQY MDAPSPHGAT NKIYFQIRLD KLLSLGQDAY KATISNPSLE MVDLSKKICS 540 LMENSDEWSK LLKLADDNEL LTDDQQDQFA ENLIKEKLHI WLLHKVGDGG KGPSVLDYEG 600 QGVLHLAAAL GYDWAIRPTV TSGVNINFRD VHGWTALHWA AFCGRERTVV ALIALGAAPG 660 ALTDPTPDFP SGSTPADLAS ANGHRGISGF LAESSLTSHL QALNLKEANM AEISGLPGIG 720 DVTERSASQP ASGDSLGAVR NAAQAAARIY QVFRVQSFQR KQAVQYKDEK GGISDEHALS 780 LLSFKSSKPG KLDPRHAAAS RIQNKFRGWK GRKEFLLIRQ RIVKIQAHVR GHQVRKHYRK 840 IVWSVGIVEK IILRWRRRGA GLRGFRSAEG AMGSSSSGIC TNLITDKPAG DDYDFLQEGR 900 KQTEDRLQKA LARVKSMAQY PEARDQYRRI LTVVSKMQES QATQEKMLED PTEMDEGHFM 960 SEFKELWDDD APIPGYSSLH N* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g23800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010234692.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X3 | ||||
TrEMBL | A0A0Q3F9M3 | 0.0 | A0A0Q3F9M3_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G23800.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g23800.2.p |