PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g19640.2.p | ||||||||
Common Name | BRADI_3g19640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 583aa MW: 63548.2 Da PI: 6.0905 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.1 | 1.7e-28 | 256 | 312 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg+nWrKYGqK+vk+s+++rsYYrCt ++C +kkkve+ d++v+ei+Y+g+H he Bradi3g19640.2.p 256 GDGFNWRKYGQKQVKSSDNSRSYYRCTNSSCLAKKKVEHYP-DGRVIEIIYRGTHSHE 312 6****************************************.***************8 PP | |||||||
2 | WRKY | 101.6 | 4.6e-32 | 427 | 484 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vkg+++prsYYrCt+ gCpv+k+ve++a+d + +++tYeg+Hnh+ Bradi3g19640.2.p 427 SDGYRWRKYGQKIVKGNPNPRSYYRCTHDGCPVRKHVEKAADDINNMVVTYEGKHNHD 484 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-24 | 245 | 314 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-22 | 249 | 314 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.931 | 250 | 314 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-28 | 255 | 313 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-21 | 257 | 311 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-31 | 420 | 486 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.132 | 421 | 486 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-27 | 421 | 486 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.2E-37 | 426 | 485 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-25 | 428 | 484 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MADGEPVAPA EGKHPAVEAA SAEAEKHPPP EPPESAPAEA KPEKEVEMET EASEVGKAEP 60 KEMMETDASE VGKAEPKEMM ETAEASDVGK AEPKEMMEKE EVAEPKEVKV AEPKEKEAEP 120 KEAVKVKVEK KEKEKAEIVA TRRPPGSSPD APILAVPMVA VPCFIAPPGF AFAMSHQAAL 180 ASVTAQAHMQ LQSPTSSAYS EGLPSPFPHP ITPIAIRPLQ QAPSVTQGNV CRPIAERPSP 240 SELKVHQHQV AVNVVGDGFN WRKYGQKQVK SSDNSRSYYR CTNSSCLAKK KVEHYPDGRV 300 IEIIYRGTHS HEPPQKTRFV KERLPHINVS PRGEETFRLV NTEIMESSLT PTPTSNKLKK 360 SVVENSEQQL FCSSDCEGDA GIKSEDEHPS AEPQPKRRIV EATTPNSSPV LRTVREQKII 420 VQAGKMSDGY RWRKYGQKIV KGNPNPRSYY RCTHDGCPVR KHVEKAADDI NNMVVTYEGK 480 HNHDQPFQSS NESRDGSISL ITSAVTATDQ TVTVASISDQ KPSTSSSTQK AAETESIKDT 540 TLEHGGEKGV ESAQTLLSVT NPDDMKNSLL KDTSAVVPVQ NN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 426 | 486 | 17 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 426 | 486 | 17 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g19640.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571606.1 | 0.0 | probable WRKY transcription factor 32 | ||||
TrEMBL | A0A0Q3I5Q0 | 0.0 | A0A0Q3I5Q0_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G19640.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 2e-66 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g19640.2.p |