PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g16121.6.p | ||||||||
Common Name | BRADI_3g16121 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 929aa MW: 105490 Da PI: 7.4878 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.9 | 1.3e-26 | 98 | 186 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA +vGFsvr+++s+ksk +++i++ +fvCskeg+++e++ +k+r++ a+ r gC+a+l+v ++ d+kw+vtkl++eHnHe+ Bradi3g16121.6.p 98 FYIAYAGRVGFSVRIARSRKSKCSESIIMLRFVCSKEGFSKEKRVVeGKKTRKRPASIREGCNAMLEVLRRGDNKWVVTKLVKEHNHEV 186 9**************************************9998776356677777899*****************************96 PP | |||||||
2 | FAR1 | 57 | 6.4e-18 | 220 | 310 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraet..rtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY +YA +vGF+ r+++s+ks ++++ ++ ++vCs++ +++ +++++e+++r +a + r gC+a +++ ++++++w+v+kl eH+Hel+p Bradi3g16121.6.p 220 FYYSYAIRVGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRETNAEDAKRGQALDplRDGCEALFEIIRKQQDVWMVSKLIIEHTHELNP 310 9*******************9.6777***************99999777777665543399****************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.3E-24 | 98 | 186 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 8.8E-16 | 220 | 310 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.7E-18 | 411 | 501 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.891 | 678 | 726 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 6.9E-7 | 678 | 723 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.3E-5 | 701 | 728 | IPR006564 | Zinc finger, PMZ-type |
SuperFamily | SSF52540 | 7.97E-6 | 829 | 901 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.850.10 | 8.6E-5 | 829 | 901 | IPR001752 | Kinesin motor domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007018 | Biological Process | microtubule-based movement | ||||
GO:0003777 | Molecular Function | microtubule motor activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0008017 | Molecular Function | microtubule binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 929 aa Download sequence Send to blast |
MEVEGQGMME PQGVELEDDS INFWASLGVS TTHVHGVDQM PALHNVQMVD HHVQLLPAAT 60 TVSHPQSVCK ELFPVEADPC LEPRVGMEFE SGEAAKTFYI AYAGRVGFSV RIARSRKSKC 120 SESIIMLRFV CSKEGFSKEK RVVEGKKTRK RPASIREGCN AMLEVLRRGD NKWVVTKLVK 180 EHNHEVGMPS TVHYIATESD TVVDPYIGME FESLESAKTF YYSYAIRVGF EARVRQSRKS 240 QDESLKMLKL VCSRHRYHSG RETNAEDAKR GQALDPLRDG CEALFEIIRK QQDVWMVSKL 300 IIEHTHELNP APPSRVCCVR SQGEILVIAK NFADTRNLLL NGQDSQPSRE IRYNDLGPED 360 AQSLLEYLRK VQVEDPAFFY AVQLDKNEQT VNIFWADANA RMAYYHFGDA VRFETAYRNS 420 KEHIPIVIFS GVNHHVQPVV FGCALLVDES EKSFAWLFEK WLEAMHVRPP VSFVTELNQQ 480 MAAAAAKVLP DTCHIFCEKH IFGTVKEELH NIYPELDHFI TDLRKCIDEC RIEESFESCW 540 DSVLIKHGFR NNEVLRSLYD IRQQWAPAYT KKSFHAANLL PQSSENFEKI IDKYFSSKTQ 600 LQVSVQQLGK AICSFYEKEA QADYLTMVQV PALRTASPME KQASLIFTRT VFDIFQEQFA 660 ESFGYHAERL EDGMVHRYRV TVDDGDEESH TVTFSPDQST VCCSCCLFES CGILCRHALR 720 VFIIEGVRFL PKAYVLKRWT KHAKSTVTLD NYTDLRGYSE DPSTSRYNDL CYDAIKCAKE 780 GSASSELYKI AKDALHKALD EVMSLRNTRQ QNLPNRTTSL KSPVKKFGKA KDTSAKSLKS 840 CAATVCGLVL VQFNTYAMRI RTMKIILVAL AGSEKAWKNG AEGQVCFEVK TIKKNTNALK 900 APNYCLQANQ ITCLTTYRSL TYFSRCTG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g16121.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252774 | 0.0 | AK252774.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf172k23, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316747.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | A0A2K2CXG7 | 0.0 | A0A2K2CXG7_BRADI; Uncharacterized protein | ||||
STRING | Traes_5BL_CCDB985ED.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-126 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g16121.6.p |