PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g14480.1.p
Common NameBRADI_3g14480, LOC100827695
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 965aa    MW: 106621 Da    PI: 9.308
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g14480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-07309328626
                       -SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                       C++f r G C++G++C++aH+
  Bradi3g14480.1.p 309 CNDFVR-GRCSRGANCRYAHD 328
                       ******.*************7 PP
2zf-CCCH20.39.5e-07366386425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       ++C+ffa+ G C++G +C++ H
  Bradi3g14480.1.p 366 KPCKFFAE-GRCRRGQSCPYLH 386
                       79******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.032221245IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.906224246IPR000571Zinc finger, CCCH-type
SMARTSM003560.0032302329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812303330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5309329IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-5309328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.122362389IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5363388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-7363387IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4365386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4366388IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
MTGVARRGRS KWDTQEISPD IVEISEDESP PMNKDDQSKD GDSLPSQDRT NDNGKQLGES  60
SNLKPDAFMH RGSAGQEQEH THGLNKDIKE RQSKASSERS QPSRMADDVH NNNGWGKLGL  120
EKATGNQGMS RYADDRRRGD GWGTAVGRGY PSRMSSGPDA WRQRSRSPSP RGAWNRSRRI  180
RSRSRSRSRS RERGRGRSRS PYFSDRGSDW RVDRGRASGG PSLLCRDFTA GRCRRGLHCR  240
FPHEDGGRRE FDELYAADPR ERYVHENKDF MDPREPNDYL RSRPSRGHYE EGTRERSEPR  300
RDYRSADQCN DFVRGRCSRG ANCRYAHDDS ASHVGWRDDV REIAHGRGGP DSSFGNRTEH  360
RRENKKPCKF FAEGRCRRGQ SCPYLHEETP QSQMGLGPPD EPPKYSDART TGGNYSNWGE  420
QTNATHGSSH ILSRDDRENP GSQGTGRVDT GYEYKNRQLK EAGRSQYQII PQEDFGSQAQ  480
NKQEMTASKQ PQFLSPIQTS VDSMNHDKVA GTDGPSGSGT TGNLSMQTAM HAANLLQAQN  540
LSQIAQSQDA IPPAPTLPVT SQLQNATSIL PFNSQLQQSD FSLHPNRQDQ FLASQTAAPY  600
MGHNQHGYTP GPHALPDLSI LNGQNFSVAG QVPENRPTPA HAGQRQATMD MPNPSQDSGT  660
QSRQDTHNFQ PVAPNMQTQN QTLQGLSGQD SGIQSIHNTH NFLPVSQYVQ SQTQNLQGLS  720
VLPNSSSADM VGAPVPRNAA TSGEDFRRAV TSLAPFLMQT GTTGLQSSQP NLNPSLMVTS  780
SAATPAVQPN MWPWAQQQAG MVQPTHPIPS EQQAPQTFQV STAAGTSNGN PVLLTHSVVP  840
TAHAATSVVN ETTMPSENKK GEPRDTEGEA PEDGDNKKSK ESKALKLFKL ALADFVKEAL  900
KPTWKEGQMT REVHKTIVKK VVDKVTSTVE NTPQTKEKIE VYMAYSKEKL SKLVQAYVGK  960
YVKA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184192RSRSRSRER
2188198RSRERGRGRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g14480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234284.10.0zinc finger CCCH domain-containing protein 55
RefseqXP_010234285.10.0zinc finger CCCH domain-containing protein 55
RefseqXP_010234286.10.0zinc finger CCCH domain-containing protein 55
SwissprotQ6YYC00.0C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBLI1I0R90.0I1I0R9_BRADI; Uncharacterized protein
STRINGBRADI3G14480.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Representative plantOGRP1203666
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]