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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g12550.1.p | ||||||||
Common Name | BRADI_3g12550, LOC100839530 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | LBD | ||||||||
Protein Properties | Length: 215aa MW: 23669.4 Da PI: 6.0026 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122 | 3.2e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++Cv+apyf +eq +++fa++hk+FGasn +k+l++lp ++r +a+ ++ yeA+ar+rdP+yG+v++i++lqqq+ +l+a Bradi3g12550.1.p 7 PCGACKFLRRKCVNGCVFAPYFSHEQgAAHFAAIHKVFGASNASKILTHLPASDRCEAAVTMSYEAQARLRDPIYGCVAHIFSLQQQVVNLQA 99 7*************************89***************************************************************** PP DUF260 93 elallkee 100 +l++ +++ Bradi3g12550.1.p 100 QLESFRTQ 107 **988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.262 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.3E-37 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MTGLSSPCGA CKFLRRKCVN GCVFAPYFSH EQGAAHFAAI HKVFGASNAS KILTHLPASD 60 RCEAAVTMSY EAQARLRDPI YGCVAHIFSL QQQVVNLQAQ LESFRTQAIQ GYGDGSSIST 120 PQKDDCGNMF ARYLQDEQQL LFHPTMPSSS SIKSEDQLYS GNDHFTSTST QSAQHYEPDL 180 CMPDYSNTNP YCTMEGYHDM DDLQSVAFAY LNKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 3 | 120 | 7 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 3 | 120 | 7 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g12550.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573219.1 | 1e-161 | LOB domain-containing protein 29 | ||||
Swissprot | Q5UG13 | 4e-63 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | I1I028 | 1e-160 | I1I028_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G12550.1 | 1e-160 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 2e-54 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g12550.1.p |
Entrez Gene | 100839530 |
Publications ? help Back to Top | |||
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