PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g11520.1.p | ||||||||
Common Name | BRADI_3g11520, LOC100833498 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 331aa MW: 36688.7 Da PI: 6.7793 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.2 | 1.9e-10 | 40 | 89 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rEr RRd++N+ f+eL + l ++ ++++Ka+iL +++ +k+L Bradi3g11520.1.p 40 RKVQKADRERMRRDKLNEQFQELGTTLDPD----RPRNDKATILGDTIQMLKDL 89 5677889********************997....799**************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.976 | 39 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-12 | 40 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.80E-7 | 40 | 93 | No hit | No description |
SuperFamily | SSF47459 | 4.19E-13 | 40 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-8 | 40 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-8 | 45 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MDPRPHKPQD DRYFHQHDGA CHADPSQRAE CKAQGLVTVR KVQKADRERM RRDKLNEQFQ 60 ELGTTLDPDR PRNDKATILG DTIQMLKDLS SQVNKLKAEY SSLSEEEREL TQEKNELRDE 120 KASLKSDIDN LNTQYQQRIR MLYPWTGMEP SVVIGPPPSY PFPVPVPIPT GAVPMHPQLQ 180 AYPFFRNQTL GTVPNPCTPY MAYTQPCHPD QPSNQFSTPV PRSSSNQSHS PAQDHRSKSC 240 TLQQTSCGRR SDDFGDVATD LELKTPGSSA PSHSEIAKKD SSSDLKKKKQ CINQINGSIL 300 TEGSSSSRCS SSGPPDVSNS VGDGSVPDDQ * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g11520.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003573201.1 | 0.0 | transcription factor bHLH121 isoform X2 | ||||
Swissprot | Q9LT23 | 8e-70 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | I1HZY6 | 0.0 | I1HZY6_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G11520.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11767 | 25 | 29 | Representative plant | OGRP3401 | 14 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 1e-59 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g11520.1.p |
Entrez Gene | 100833498 |
Publications ? help Back to Top | |||
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