PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g10075.4.p
Common NameBRADI_3g10075, LOC104583495
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 345aa    MW: 38577.4 Da    PI: 9.6279
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g10075.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-1658104148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       r rW++eE + l++ v+ lG+++W+tIa  m+  R+++qc++rw  yl
  Bradi3g10075.4.p  58 RRRWSEEENDVLIQMVQNLGTKNWSTIACAMP-LRSRYQCRERWTYYL 104
                       78******************************.9**********9886 PP
2Myb_DNA-binding48.32.3e-15110154147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r++W+++++  l++a++++G++ W+  a+ ++ gRt+k +k++w+ +
  Bradi3g10075.4.p 110 RQAWSEQDEVTLIHAHEMHGNK-WRELAKLFP-GRTGKAVKNHWNGH 154
                       89********************.*********.***********966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.26453104IPR017930Myb domain
SuperFamilySSF466891.87E-2656151IPR009057Homeodomain-like
SMARTSM007171.5E-1257106IPR001005SANT/Myb domain
PfamPF002498.8E-1458104IPR001005SANT/Myb domain
CDDcd001671.20E-1160104No hitNo description
Gene3DG3DSA:1.10.10.602.6E-1960111IPR009057Homeodomain-like
PROSITE profilePS5129424.579105159IPR017930Myb domain
SMARTSM007176.2E-14109157IPR001005SANT/Myb domain
PfamPF002493.1E-14110152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-20112160IPR009057Homeodomain-like
CDDcd001672.68E-10112152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MRQTEDGLPM RRSTSRSSQM RGIAQERAKL QDAPSKNAKW RTVECIHRKT GVYSFKKRRR  60
WSEEENDVLI QMVQNLGTKN WSTIACAMPL RSRYQCRERW TYYLNPALNR QAWSEQDEVT  120
LIHAHEMHGN KWRELAKLFP GRTGKAVKNH WNGHMKRKLK SYLARGLPKQ FQNLPVDPSV  180
SNRGWSTPKE TGENASMLDG QSSDSIRSVS EGKPMSSSPK GFGARSADAQ PKVDAGDGQI  240
DRVVSKFPVV TDNDMETVVS SSSVDLKVCV AAPSFVRSTS EEKQMSYTGL SPAHSSQSRY  300
AHLDELSELH QSDIADLLDM SYCESLMIIP PDSPQSGNGG VPGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-276116110110B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g10075.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318247.10.0transcription factor MYB3R-1 isoform X4
TrEMBLA0A2K2CWB30.0A0A2K2CWB3_BRADI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-39myb domain protein 3r-4