PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

MYB

Protein Properties

Length: 346aa MW: 38648.5 Da PI: 9.6279

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g10075.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.9e-16	59	105	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r rW++eE + l++ v+ lG+++W+tIa m+ R+++qc++rw yl Bradi3g10075.3.p 59 RRRWSEEENDVLIQMVQNLGTKNWSTIACAMP-LRSRYQCRERWTYYL 105 78****************************.9********9886 PP
2	Myb_DNA-binding	48.3	2.3e-15	111	155	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r++W+++++ l++a++++G++ W+ a+ ++ gRt+k +k++w+ + Bradi3g10075.3.p 111 RQAWSEQDEVTLIHAHEMHGNK-WRELAKLFP-GRTGKAVKNHWNGH 155 89******************.*****.*********966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.264	54	105	IPR017930	Myb domain
SuperFamily	SSF46689	1.91E-26	57	152	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-12	58	107	IPR001005	SANT/Myb domain
Pfam	PF00249	8.8E-14	59	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-19	61	112	IPR009057	Homeodomain-like
CDD	cd00167	1.17E-11	61	105	No hit	No description
PROSITE profile	PS51294	24.579	106	160	IPR017930	Myb domain
SMART	SM00717	6.2E-14	110	158	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-14	111	153	IPR001005	SANT/Myb domain
CDD	cd00167	2.62E-10	113	153	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.4E-20	113	161	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MRQTEDGLPM RRSTSRSSQM RGIAQERAKL QDAPSKNAKW RTVAECIHRK TGVYSFKKRR 60 RWSEEENDVL IQMVQNLGTK NWSTIACAMP LRSRYQCRER WTYYLNPALN RQAWSEQDEV 120 TLIHAHEMHG NKWRELAKLF PGRTGKAVKN HWNGHMKRKL KSYLARGLPK QFQNLPVDPS 180 VSNRGWSTPK ETGENASMLD GQSSDSIRSV SEGKPMSSSP KGFGARSADA QPKVDAGDGQ 240 IDRVVSKFPV VTDNDMETVV SSSSVDLKVC VAAPSFVRST SEEKQMSYTG LSPAHSSQSR 300 YAHLDELSEL HQSDIADLLD MSYCESLMII PPDSPQSGNG GVPGM*

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MRQTEDGLPM RRSTSRSSQM RGIAQERAKL QDAPSKNAKW RTVAECIHRK TGVYSFKKRR  60
RWSEEENDVL IQMVQNLGTK NWSTIACAMP LRSRYQCRER WTYYLNPALN RQAWSEQDEV  120
TLIHAHEMHG NKWRELAKLF PGRTGKAVKN HWNGHMKRKL KSYLARGLPK QFQNLPVDPS  180
VSNRGWSTPK ETGENASMLD GQSSDSIRSV SEGKPMSSSP KGFGARSADA QPKVDAGDGQ  240
IDRVVSKFPV VTDNDMETVV SSSSVDLKVC VAAPSFVRST SEEKQMSYTG LSPAHSSQSR  300
YAHLDELSEL HQSDIADLLD MSYCESLMII PPDSPQSGNG GVPGM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-27	62	162	10	110	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g10075.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024318247.1	0.0	transcription factor MYB3R-1 isoform X4
TrEMBL	A0A2K2CWB1	0.0	A0A2K2CWB1_BRADI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	3e-40	Homeodomain-like protein

Link Out ? help Back to Top
Phytozome	Bradi3g10075.3.p
Entrez Gene	104583495