PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g09670.1.p
Common NameLOC100837792
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 377aa    MW: 39769.5 Da    PI: 8.1519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g09670.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12117166355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a++   +v+YIk+Lq
  Bradi3g09670.1.p 117 SSHITVERNRRKQMNENLAVLRTLMPCF---YVKRGDQASVIGGVVDYIKELQ 166
                       5899***********************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.999114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.17E-12115170No hitNo description
Gene3DG3DSA:4.10.280.103.8E-12117177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-15117185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-9120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd021160.00181314372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAMGDDGGLC KLFANDDCEF RHVSGDLFSI LDTWEKCMNG AGEGGGGAPC SAAALSPSSV  60
VVVDGAAENN AVVGVRPKPG SRRREAADEE KGGAPGRKKH KGSTVVDDGS DGAAKMSSHI  120
TVERNRRKQM NENLAVLRTL MPCFYVKRGD QASVIGGVVD YIKELQQVLH SLEAKKHRKV  180
YAVEHALSPR PGPTPLSPRP LLKPPISPRP AVPISPPTPT PGSPYKPIQR LPHYISPATS  240
SSSTISHAAS YDVISPRPYL PTLDSIITEL AAQAAARAPG ALGGGGGGAG LNLLLLPDVK  300
VEFAGPNLVL KTTSHRARPG QVLRIIAALE SLSLEILHVS ISTVDDTMVH SFTIKIGIEC  360
ELSAEELVQE IRQTFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g09670.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874823e-62AK287482.1 Oryza sativa Japonica Group cDNA, clone: J043025B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571175.10.0transcription factor SPEECHLESS
TrEMBLI1HZB60.0I1HZB6_BRADI; Uncharacterized protein
STRINGBRADI3G09670.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.15e-36bHLH family protein