PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g08967.1.p
Common NameBRADI_3g08967, LOC100828296
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BES1
Protein Properties Length: 379aa    MW: 38986 Da    PI: 9.7569
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g08967.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822174.94e-54151232106
            DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl....eeaeaagssasasp 90 
                       +s r ptw+ErEnn+rRERrRRaiaaki++GLR++Gny lpk++DnneVlkALc eAGw+ve+DGttyrkgskp+    ++ +   +s s sp
  Bradi3g08967.1.p  15 ASSRVPTWRERENNRRRERRRRAIAAKIFSGLRSYGNYTLPKHCDNNEVLKALCDEAGWTVEPDGTTYRKGSKPPtaaeRAGDLLAHSGSPSP 107
                       689***********************************************************************9655444566678889*** PP

            DUF822  91 esslqsslkssalasp 106
                       +ss+q s+++s+ +s 
  Bradi3g08967.1.p 108 CSSYQVSPRASSSSSH 123
                       *****88777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.0E-5316151IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAGIMGGGAG GGGMASSRVP TWRERENNRR RERRRRAIAA KIFSGLRSYG NYTLPKHCDN  60
NEVLKALCDE AGWTVEPDGT TYRKGSKPPT AAERAGDLLA HSGSPSPCSS YQVSPRASSS  120
SSHITLGAGC GGGYFGGGVE GSSLIPWLKN LSSSTSNNIA SSSKYPGGAH HPYFNGGSIS  180
APVTPPSGSP PRTPRFKRGW GEYPGAQVQP PWAGAGSSGY GSYNYNYASL PNSTPPSPRG  240
RKKFIAPDPA WLAGFQISSA GPSSPTYNLM ASQNPFVAVR EAAAAATAGS SRMYTPGQSG  300
ACSPVVGGAG LVIRGDTHMA DRAAAEDFAF GNGGGGGNGR VPGLLKAWEG ERIHEESASD  360
ELELTLGNSS TRAGANQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-211888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-211888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-211888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-211888372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g08967.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9626365e-73EU962636.1 Zea mays clone 244325 brassinazole-resistant 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571150.20.0protein BZR1 homolog 3
SwissprotQ5Z9E51e-126BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBLA0A0Q3J7R20.0A0A0Q3J7R2_BRADI; Uncharacterized protein
STRINGBRADI3G08967.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Representative plantOGRP15951542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.15e-63BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]