PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g08870.1.p
Common NameBRADI_3g08870, LOC100826451
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 315aa    MW: 33332.9 Da    PI: 6.427
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g08870.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.42.3e-33171092103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       F+ k+y ++ed++++ +i w + +nsfvv+d+  f++++Lp++Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll
  Bradi3g08870.1.p  17 FVAKTYGMVEDPATNGVIAWGSGSNSFVVIDPFVFSQTLLPTHFKHSNFSSFVRQLNTYGFRKVDPDK---------WEFAHVSFLRGQTHLL 100
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i r++s+
  Bradi3g08870.1.p 101 RQIVRRSSS 109
                       ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.8E-3613106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-3113106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-4913106IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-2817106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-171740IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-175567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.2E-176880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MMTGGGGGGE AAGVAPFVAK TYGMVEDPAT NGVIAWGSGS NSFVVIDPFV FSQTLLPTHF  60
KHSNFSSFVR QLNTYGFRKV DPDKWEFAHV SFLRGQTHLL RQIVRRSSSS GKRKDDGGCA  120
GASGADDHDD DSTTMVAMEV MRLKQEQKAI EDRVAAMWRR VQETERRPKQ MLAFLLKVVG  180
DPQVLRRLVA NTSSSNSNSS SGGSDRSEVA FHGGGGPAEG AEVKRPRLLL ERDHQHGGKM  240
SSSPAADGVG IGIGSGVGVR RDGFYGVSEE TFAPEHSVDF TGFYTGGDGF GDGQVDAGGG  300
GGDLPYAFPV DSGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-23510817131Heat shock factor protein 1
5d5v_B4e-23510817131Heat shock factor protein 1
5d5v_D4e-23510817131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g08870.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571145.10.0heat stress transcription factor C-2a
SwissprotQ6EUG41e-107HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLI1HZ160.0I1HZ16_BRADI; Uncharacterized protein
STRINGBRADI3G08870.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.16e-55heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]