PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g06170.2.p | ||||||||
Common Name | BRADI_3g06170, LOC100829302 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TALE | ||||||||
Protein Properties | Length: 305aa MW: 32964 Da PI: 6.3532 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.6 | 1.8e-07 | 253 | 286 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Bradi3g06170.2.p 253 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 286 469*****************************87 PP | |||||||
2 | ELK | 26.8 | 1.1e-09 | 207 | 228 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L+++Y+++L+++++E++ Bradi3g06170.2.p 207 ELKSELKQGYKEKLVDIREEIM 228 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.6E-19 | 44 | 88 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.4E-16 | 47 | 84 | IPR005540 | KNOX1 |
SMART | SM01256 | 7.6E-26 | 96 | 151 | IPR005541 | KNOX2 |
Pfam | PF03791 | 4.5E-16 | 104 | 150 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.83 | 207 | 227 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.1E-6 | 207 | 228 | IPR005539 | ELK domain |
SMART | SM01188 | 8.3E-4 | 207 | 228 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.515 | 227 | 290 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-15 | 229 | 291 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.5E-10 | 229 | 294 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.52E-11 | 230 | 289 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-24 | 234 | 290 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.3E-18 | 247 | 286 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MSFHYPDHGL AMDAAAAAAA AASSPNPSFS PGGGGGLGVG VGGEREKAAI AAHPLYERLL 60 EAHVACLRVA TPVDQLPRID AQIAARPPPL VAAAGSAGGP SGGEELDLFM THYVLLLCSF 120 KEQLQQHVRV HAMEAVMGCW ELEQSLQSLT GASPGEGTGA TMSDDEDNQV DSETNLFDGN 180 DGSDGMGFGP LILTEGERSL IERVRHELKS ELKQGYKEKL VDIREEIMRK RRAGKLPGDT 240 AATLKAWWQA HSKWPYPTED DKARLVQETG LQLKQINNWF INQRKRNWHS SNASSSSEKT 300 KKKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 283 | 303 | RKRNWHSSNASSSSEKTKKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g06170.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570788.1 | 0.0 | homeobox protein knotted-1-like 2 isoform X2 | ||||
Swissprot | Q0E3C3 | 0.0 | KNOS2_ORYSJ; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | I1HY07 | 0.0 | I1HY07_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G06170.3 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-135 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g06170.2.p |
Entrez Gene | 100829302 |