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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bradi3g05530.1.p |
Common Name | BRADI_3g05530, LOC100825826 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family |
Trihelix |
Protein Properties |
Length: 368aa MW: 38365.7 Da PI: 3.9763 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bradi3g05530.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 31.3 | 5.2e-10 | 81 | 160 | 1 | 71 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkr 71
+Wt e+laL++a+ +++ r+ ++ ++W+ v++++ ++r r + Ck +we l+ +y +++++e +
Bradi3g05530.1.p 81 EWTAAETLALVAAVAATDDGWARSVSAFQKWAIVAENLassegaggsSSRRRARPAGDCKRRWEALAAEYAAVRQWEART 160
5********************************************998999999***********************974 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 368 aa
Download sequence Send
to blast |
MDPNDAGLPC IVQALASIDP SDTTVLPCIV QALAALPPSP PTPKTPAPAT PRAQPPPPPA 60 TESSNSMPPS PRRTRSGRAP EWTAAETLAL VAAVAATDDG WARSVSAFQK WAIVAENLAS 120 SEGAGGSSSR RRARPAGDCK RRWEALAAEY AAVRQWEART GGRYSEMGAA ARRKAGLPSE 180 FDTEVYGIMD ALLADSGDAG GGGGKEGLVG AGGGGGADVG EEEGDGVGVG EEEEDDDDDD 240 EKEEELEGDD NEGEMQVDGG NANASDDLEY CETETQNEPK KSQIEAWELA NKLNDNAQHI 300 HMILEGEVGD DAGQNHAPAD PISPNAMEST RQKADELIKS LGGLVSYLNQ FTDLIKDNGF 360 EDVVGVN*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G31270.1 | 2e-11 | sequence-specific DNA binding transcription factors |