PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g05510.1.p | ||||||||
Common Name | BRADI_3g05510, LOC100823377 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | SBP | ||||||||
Protein Properties | Length: 330aa MW: 35413.6 Da PI: 9.4569 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126 | 1.5e-39 | 60 | 137 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC ++l ak+yhr+h+vCe+h+k+p v+v+g+e+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+ Bradi3g05510.1.p 60 RCQVEGCGVELRAAKDYHRKHRVCEAHTKCPRVVVAGQERRFCQQCSRFHALSEFDEKKRSCRRRLSDHNARRRKQQP 137 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.1E-33 | 53 | 122 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.855 | 58 | 135 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.37E-38 | 59 | 140 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.6E-30 | 61 | 134 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MEWTAPKPAT SPPTHLLWDW GDSAAPGSSG DAAGRRGKEK RAKGEEGGGG GGGGGGAVVR 60 CQVEGCGVEL RAAKDYHRKH RVCEAHTKCP RVVVAGQERR FCQQCSRFHA LSEFDEKKRS 120 CRRRLSDHNA RRRKQQPDAF SFAPARLPST LIFDDRRQIS FVWNKGPPSH VRPFACSPWE 180 SPSEFKLSQV KNTRGVSTNG QVHLDKSHLS NAVPTLSHDM DELFPVKGPD ASLAASKLDG 240 APDLQHALSL LSASSRGLPD PAQQASCLVQ FSGASQNSRG LHSSHGVSSA SAPCAEGQPM 300 APSPHLVRFT VDGTSSGYDT TFFGLNKIN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-26 | 51 | 134 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 133 | KKRSCRRRLSDHNARRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g05510.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003570368.1 | 0.0 | squamosa promoter-binding-like protein 4 | ||||
Swissprot | Q653Z5 | 1e-90 | SPL11_ORYSJ; Squamosa promoter-binding-like protein 11 | ||||
TrEMBL | I1HXS7 | 0.0 | I1HXS7_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G05510.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6271 | 29 | 52 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 3e-43 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g05510.1.p |
Entrez Gene | 100823377 |