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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g04920.1.p | ||||||||
Common Name | BRADI_3g04920, LOC100829021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ARF | ||||||||
Protein Properties | Length: 916aa MW: 101444 Da PI: 5.8745 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.6e-24 | 134 | 235 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F + Bradi3g04920.1.p 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI--W 222 99*****************************86555544..8************************************************..7 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++++r+ Bradi3g04920.1.p 223 NDNNQLLLGIRRA 235 777778***9997 PP | |||||||
2 | Auxin_resp | 120.6 | 1.2e-39 | 260 | 343 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k Bradi3g04920.1.p 260 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 343 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-48 | 119 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.1E-42 | 126 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.18E-20 | 133 | 234 | No hit | No description |
SMART | SM01019 | 1.2E-24 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-22 | 134 | 235 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.971 | 134 | 236 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-34 | 260 | 343 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.88E-8 | 774 | 859 | No hit | No description |
Pfam | PF02309 | 7.1E-8 | 780 | 869 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.692 | 783 | 867 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 916 aa Download sequence Send to blast |
MKLSPSAGGG LPDQPGSPEV AEEHKCLNSE LWHACAGPLV SLPAVGSRVL YFPQGHSEQV 60 SASTNKEIES QIPNYPNLPP QLICQLHNVI MHADAETDEV CAQMTLQPLS PQELKDPFLP 120 AELGTANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELMAKDLH 180 GNEWKFRHIF RGQPKRHLLT TGWSVFISAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT 240 VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS 300 VGMRFRMLFE TEESSVRRYM GTITGISDLD PARWPNSHWR SVKVGWDEST AGERQPRVSL 360 WEIEPLTTIP MYSSPFPMRL KRPWPTGLPS LYGGKEDDLT SSLMWLRDGA NPGFQSFNFG 420 GLGMNPWMQP RLDTSLLGLQ PDMYQAISAA ALQNPAKQVS PAVLQFQQPQ NIAGRSLVSS 480 QILQQVQPQF QQMHHQNIND NTIQGHNQSE YLQQQLQRCQ SFNGQKPQEQ QQQESHQQQQ 540 SQHQHMQEQN HSPNFQSVPN ALSVFSQLSP STQSPPSIMQ TVSAFSQQQN FQDTDINSLS 600 PLNISSMHDV LRPFPSEAGS NLQDVPRTTP VPVSDPWSSK RVVMESVIPS RSHVTVSHIE 660 QLDSAPSNIP QSSSLAPLPG RESVVDQDEN SDHQNHLLFG VNIDSQSLLM QDDIPGLQNE 720 NDCIASLQDD NGSNTIPYST CNFLSPSQNN FPLNEALTSS GCLDGSGYVP FSENPDQVNR 780 PPATFVKVYK SGAVGRLLDI TRFSSYHELR SELGHLFGLE GQLEDPVRSG WQLVFVDREN 840 DVLLVGDDPW QEFVNSVSCI KILSPQEVQQ MGKQGIELLS SAPARRLGNG CDNYVSRQES 900 RNLSTGIAAV GSVEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-158 | 11 | 364 | 40 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g04920.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003575362.1 | 0.0 | auxin response factor 6 isoform X1 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A0Q3J5G6 | 0.0 | A0A0Q3J5G6_BRADI; Auxin response factor | ||||
STRING | BRADI3G04920.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2012 | 36 | 85 |
Representative plant | OGRP856 | 14 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g04920.1.p |
Entrez Gene | 100829021 |
Publications ? help Back to Top | |||
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