PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g04920.1.p
Common NameBRADI_3g04920, LOC100829021
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 916aa    MW: 101444 Da    PI: 5.8745
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g04920.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.6e-24134235199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   +
  Bradi3g04920.1.p 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI--W 222
                       99*****************************86555544..8************************************************..7 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  Bradi3g04920.1.p 223 NDNNQLLLGIRRA 235
                       777778***9997 PP

2Auxin_resp120.61.2e-39260343183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Bradi3g04920.1.p 260 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 343
                       79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-48119263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-42126249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.18E-20133234No hitNo description
SMARTSM010191.2E-24134236IPR003340B3 DNA binding domain
PfamPF023623.1E-22134235IPR003340B3 DNA binding domain
PROSITE profilePS5086312.971134236IPR003340B3 DNA binding domain
PfamPF065071.5E-34260343IPR010525Auxin response factor
SuperFamilySSF542772.88E-8774859No hitNo description
PfamPF023097.1E-8780869IPR033389AUX/IAA domain
PROSITE profilePS5174524.692783867IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 916 aa     Download sequence    Send to blast
MKLSPSAGGG LPDQPGSPEV AEEHKCLNSE LWHACAGPLV SLPAVGSRVL YFPQGHSEQV  60
SASTNKEIES QIPNYPNLPP QLICQLHNVI MHADAETDEV CAQMTLQPLS PQELKDPFLP  120
AELGTANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELMAKDLH  180
GNEWKFRHIF RGQPKRHLLT TGWSVFISAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD PARWPNSHWR SVKVGWDEST AGERQPRVSL  360
WEIEPLTTIP MYSSPFPMRL KRPWPTGLPS LYGGKEDDLT SSLMWLRDGA NPGFQSFNFG  420
GLGMNPWMQP RLDTSLLGLQ PDMYQAISAA ALQNPAKQVS PAVLQFQQPQ NIAGRSLVSS  480
QILQQVQPQF QQMHHQNIND NTIQGHNQSE YLQQQLQRCQ SFNGQKPQEQ QQQESHQQQQ  540
SQHQHMQEQN HSPNFQSVPN ALSVFSQLSP STQSPPSIMQ TVSAFSQQQN FQDTDINSLS  600
PLNISSMHDV LRPFPSEAGS NLQDVPRTTP VPVSDPWSSK RVVMESVIPS RSHVTVSHIE  660
QLDSAPSNIP QSSSLAPLPG RESVVDQDEN SDHQNHLLFG VNIDSQSLLM QDDIPGLQNE  720
NDCIASLQDD NGSNTIPYST CNFLSPSQNN FPLNEALTSS GCLDGSGYVP FSENPDQVNR  780
PPATFVKVYK SGAVGRLLDI TRFSSYHELR SELGHLFGLE GQLEDPVRSG WQLVFVDREN  840
DVLLVGDDPW QEFVNSVSCI KILSPQEVQQ MGKQGIELLS SAPARRLGNG CDNYVSRQES  900
RNLSTGIAAV GSVEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581136440388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g04920.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575362.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0Q3J5G60.0A0A0Q3J5G6_BRADI; Auxin response factor
STRINGBRADI3G04920.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]