PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g04650.2.p
Common NameBRADI_3g04650, LOC100843186
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 368aa    MW: 42531.2 Da    PI: 10.1542
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g04650.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.1e-061135127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ykt+lC   +r+G+C + ++C+FaHgp
  Bradi3g04650.2.p 11 YKTKLCA-LFRNGHCDR-ESCSFAHGP 35
                      9******.7777*****.*******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.0E-12542IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.12E-5939IPR000571Zinc finger, CCCH-type
SMARTSM003560.00161035IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8031036IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MLPPPRRGPA YKTKLCALFR NGHCDRESCS FAHGPDELRR PPSSRPSFPP HHAGRRDYRG  60
GDFRGRIERR FSPRRRHSPG RDFRGHRSLH NRRPTSRERE SSFSRSPSRK SERRHDKKTD  120
DGETNSPKSL SVSDNSDMKK DKFSSGDEKE DHEKKLKQIR LDMEALREDK SHLEIVLDEK  180
IDEMRKISSK VNDLDQQLQR EKNECHRMTS KMKKFIKAHG RFLKAQEELK RSQARFERLG  240
DLLASDILKR GANEEVSSVH ADEDLNGSYE RSPNTAVTKK RSIPYSTSDE AKAAKKRRDR  300
DSDTITRSDK YRSEGDATDF DKASKGSEAT KSIYLKKRLW EDEKNKLGNV VSSADKYEDL  360
DEEVDVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278297KKRSIPYSTSDEAKAAKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g04650.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233847.10.0zinc finger CCCH domain-containing protein 13 isoform X3
SwissprotQ6H7U20.0C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLI1HXH20.0I1HXH2_BRADI; Uncharacterized protein
STRINGBRADI3G04650.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.16e-27C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]