PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g04375.1.p
Common NameBRADI_3g04375, LOC104583935
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 272aa    MW: 28769.2 Da    PI: 6.4072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g04375.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.91.9e-164088356
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                      y+GVr++   g+++A+I+d    gk+ ++ +lg+f+taeeAa+a++aa+ +l+g+
  Bradi3g04375.1.p 40 YRGVRRR--GGKYRAQIWD----GKCqTTAWLGSFDTAEEAARAYDAAAIALHGA 88
                      9***854..6*********....5356*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.8843998IPR001471AP2/ERF domain
SMARTSM003809.7E-1839104IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-143997IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-183998IPR001471AP2/ERF domain
PfamPF008473.0E-103987IPR001471AP2/ERF domain
PROSITE profilePS5103212.312119202IPR001471AP2/ERF domain
SMARTSM003805.5E-5159208IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-8159202IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-11166202IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MAVERDDDDK SQSVASVTRK RKKKKTTTKK KGLAEVRTAY RGVRRRGGKY RAQIWDGKCQ  60
TTAWLGSFDT AEEAARAYDA AAIALHGAAA AAAMTNFKSP AAAAAAPAAP LADADIDAHV  120
HGIGPKKEAP VPVMDSKSVQ GGREAAAAPR PAKSTPRSGF RGVYQSSTER WLGTFDAALE  180
AAGAYDEAAV GLYGARAITN FEQPPPTAAA NGGAEEPSPM HLLNDFPELT APDFLESLIP  240
GPQDHDLLTD LPPEEWQQQV HELLHGMDMV A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11822RKRKK
21824RKRKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g04375.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236272.10.0ethylene-responsive transcription factor ABI4
TrEMBLA0A0Q3LLQ70.0A0A0Q3LLQ7_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3720423