PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi3g03510.4.p | ||||||||
Common Name | BRADI_3g03510, LOC100827905 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | SBP | ||||||||
Protein Properties | Length: 486aa MW: 52242 Da PI: 8.2578 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.1 | 4e-41 | 188 | 264 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC++dls+ak+yhr+h+vCevhsk+p+v+v+gle+rfCqqCsrfh+l efD+ krsCrrrL++hn+rrrk+q+ Bradi3g03510.4.p 188 CQVEGCRVDLSSAKDYHRKHRVCEVHSKTPKVVVAGLERRFCQQCSRFHALAEFDQIKRSCRRRLNDHNHRRRKPQP 264 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.4E-32 | 180 | 249 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.359 | 185 | 262 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.41E-39 | 187 | 267 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.3E-30 | 188 | 261 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MGSFGMDWNQ KSSVLWDWEN LLPAGTNAAE NPKNGMQAEQ RFASVVAAMA NESRHSSGSS 60 GTFSSNSEMG YGSSKSSLSA SIDSSSKVGN SMEFRFAAAA NPDSNNSKNT ELGKVDDTGA 120 GTSPSSVIAV SSGEPVIGLK LGKRTYFEDA CGAQNVKNSP LGAGAPNPSP ASVKKAKVDQ 180 QKPHNSYCQV EGCRVDLSSA KDYHRKHRVC EVHSKTPKVV VAGLERRFCQ QCSRFHALAE 240 FDQIKRSCRR RLNDHNHRRR KPQPEAISFS TSRLSTMFYD ARQQTSLLFS EAPYVQMRNC 300 ASSSWDDPGP GGFKFTETKA PWLKPTTAAG VDAMHLSSQQ VSNSIMPHGA HHGFDGFMSF 360 KGTGMKFLNQ GVEASTVVSD TSGAPDLQHA LSLLSNNPAG AGNLQPSPQM HSGTTADIAG 420 TSNPAMHVLG SSPGLWLDGP PLDNHHPRFQ AFDLLGGHDS TMPHELQLPK PSYDHHAASH 480 FDRMH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-27 | 188 | 261 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi3g03510.4.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316148.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_024316149.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_024316150.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_024316151.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Refseq | XP_024316152.1 | 0.0 | squamosa promoter-binding-like protein 3 | ||||
Swissprot | A2X0Q6 | 0.0 | SPL3_ORYSI; Squamosa promoter-binding-like protein 3 | ||||
Swissprot | A3A2Z8 | 0.0 | SPL3_ORYSJ; Squamosa promoter-binding-like protein 3 | ||||
TrEMBL | I1HX29 | 0.0 | I1HX29_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G03510.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 6e-46 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi3g03510.4.p |
Entrez Gene | 100827905 |