PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g03407.2.p
Common NameBRADI_3g03407
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 1085aa    MW: 121532 Da    PI: 6.4414
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g03407.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.77.8e-2280181199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + + W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  Bradi3g03407.2.p  80 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNIWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--RD 169
                       99******************************9999986.*************************************************..55 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++ +l+++++r+
  Bradi3g03407.2.p 170 EKHQLLLGIRRA 181
                       78889***9997 PP
2Auxin_resp114.87.9e-38206289183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m  ete+  +rr++Gt++g+sdldpvrW+ S+WrsL+
  Bradi3g03407.2.p 206 AAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMTCETEELGTRRYMGTITGISDLDPVRWKSSQWRSLQ 289
                       79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-4169209IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-3972195IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-1879180No hitNo description
SMARTSM010191.6E-2180182IPR003340B3 DNA binding domain
PfamPF023621.5E-1980181IPR003340B3 DNA binding domain
PROSITE profilePS5086311.32180182IPR003340B3 DNA binding domain
PfamPF065073.6E-33206289IPR010525Auxin response factor
PfamPF023091.6E-89491036IPR033389AUX/IAA domain
PROSITE profilePS5174527.3849511035IPR000270PB1 domain
SuperFamilySSF542772.06E-69681030No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1085 aa     Download sequence    Send to blast
MFLIQVAASM QKDVEAQVPN YPNLPSKLIC LLHSVILQAD PDTDEVYAQM TLQPVNTYAK  60
EALQLSELAL RQARPQMEFF CKTLTASDTS THGGFSVPRR AAEKIFPSLD FSLQPPCQEL  120
QARDIHDNIW TFRHIFRGQP KRHLLTTGWS LFVSGKKLFA GDSVIFVRDE KHQLLLGIRR  180
ANRQPTNISS SVLSSDSMHI GVLAAAAHAA ANSSPFTIFY NPRASPTEFV IPFAKYQKAM  240
YSNQISLGMR FRMTCETEEL GTRRYMGTIT GISDLDPVRW KSSQWRSLQV GWDESAAGER  300
RNRVSIWEIE PLAAPFFICP QPFFGVKRSR QLDDESSEME NLWKRAMPWL GEEVCIKDAQ  360
TQGATIPGLS LVQWMNMNRQ QSSSLASTSM QSEYLRSASN PAMQNFGAAD LARQLYMQNH  420
LLQQNNIHLN SSKLHEQAKP VNDLCKETLP LDQLGAIRKQ QDQNQDGGSQ QRQQQSSNQV  480
IPLSQAQTNI VQAQVILQNQ MQQQQQQQQQ QPSPTQNQQG ASVQQLLQSH QQQDQNLQLQ  540
QQLLLQQQLK QQHQQQQQQQ QQQLNKLPGQ LVNLASQQTK LSDQELHLQL MQKLQQHSLM  600
SQSAVTLSRL PLIQDQQKFL VDMQQQLSNS DALAQQVIPQ QQERRTSLQT TQVPPPMQQE  660
QQQQHKLSQK QVAPADVSEA AFTPISSSSV MSKTGNTKII SRTAQSALTE EMPSCSTSPS  720
TANGNHFAQP NISRNEHCRI STEKVPHSTA QMFIPTSIEA VTPIITKELP KLNNNVIPSV  780
TTSKLPNGVS GLQNFMNNVV PTDNLETASS ATSLWPSQTD GLLHQGFPSS NFNQHQMFKD  840
ALPDVEIQGV DPSSSALFEM NNDGPLGFPI ETEGLLGNAL DSVKYQNYIS TDDENNYRMQ  900
KDARQEISTS MVSQSFGQSD MAFNSIDSAI NDGALLNRNS WPPAPPPQRM RTFTKVYKRG  960
AVGRSIDIGK YSGYGELNQA LARMFGIEGQ LEDRQRIGWK LVYTDHEDDV LLLGDDPWEE  1020
FVNCVRCIRI LSPQEVQQMS LDGDLGNTVL PNQACSSSDG GNAWRPRGDQ NSRNPSIGPF  1080
DQFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-139531083388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g03407.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570905.10.0auxin response factor 5
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0Q3J4I00.0A0A0Q3J4I0_BRADI; Auxin response factor
STRINGBRADI3G03407.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-180auxin response factor 19