PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g03407.1.p
Common NameBRADI_3g03407, LOC100842244
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 1142aa    MW: 127143 Da    PI: 6.3789
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g03407.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.68.4e-22137238199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + + W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  Bradi3g03407.1.p 137 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNIWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV--RD 226
                       99******************************9999986.*************************************************..55 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++ +l+++++r+
  Bradi3g03407.1.p 227 EKHQLLLGIRRA 238
                       78889***9997 PP
2Auxin_resp114.78.5e-38263346183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m  ete+  +rr++Gt++g+sdldpvrW+ S+WrsL+
  Bradi3g03407.1.p 263 AAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMTCETEELGTRRYMGTITGISDLDPVRWKSSQWRSLQ 346
                       79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-41126266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-39129252IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-18136237No hitNo description
PROSITE profilePS5086311.321137239IPR003340B3 DNA binding domain
SMARTSM010191.6E-21137239IPR003340B3 DNA binding domain
PfamPF023621.6E-19137238IPR003340B3 DNA binding domain
PfamPF065073.8E-33263346IPR010525Auxin response factor
PfamPF023091.8E-810061093IPR033389AUX/IAA domain
PROSITE profilePS5174527.38410081092IPR000270PB1 domain
SuperFamilySSF542772.16E-610251087No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1142 aa     Download sequence    Send to blast
MAQQTPAMSS ALAAAAAAAP CEGERKAATI NGELWHACAG PLVSLPPVGS LVVYFPQGHS  60
EQVAASMQKD VEAQVPNYPN LPSKLICLLH SVILQADPDT DEVYAQMTLQ PVNTYAKEAL  120
QLSELALRQA RPQMEFFCKT LTASDTSTHG GFSVPRRAAE KIFPSLDFSL QPPCQELQAR  180
DIHDNIWTFR HIFRGQPKRH LLTTGWSLFV SGKKLFAGDS VIFVRDEKHQ LLLGIRRANR  240
QPTNISSSVL SSDSMHIGVL AAAAHAAANS SPFTIFYNPR ASPTEFVIPF AKYQKAMYSN  300
QISLGMRFRM TCETEELGTR RYMGTITGIS DLDPVRWKSS QWRSLQVGWD ESAAGERRNR  360
VSIWEIEPLA APFFICPQPF FGVKRSRQLD DESSEMENLW KRAMPWLGEE VCIKDAQTQG  420
ATIPGLSLVQ WMNMNRQQSS SLASTSMQSE YLRSASNPAM QNFGAADLAR QLYMQNHLLQ  480
QNNIHLNSSK LHEQAKPVND LCKETLPLDQ LGAIRKQQDQ NQDGGSQQRQ QQSSNQVIPL  540
SQAQTNIVQA QVILQNQMQQ QQQQQQQQPS PTQNQQGASV QQLLQSHQQQ DQNLQLQQQL  600
LLQQQLKQQH QQQQQQQQQQ LNKLPGQLVN LASQQTKLSD QELHLQLMQK LQQHSLMSQS  660
AVTLSRLPLI QDQQKFLVDM QQQLSNSDAL AQQVIPQQQE RRTSLQTTQV PPPMQQEQQQ  720
QHKLSQKQVA PADVSEAAFT PISSSSVMSK TGNTKIISRT AQSALTEEMP SCSTSPSTAN  780
GNHFAQPNIS RNEHCRISTE KVPHSTAQMF IPTSIEAVTP IITKELPKLN NNVIPSVTTS  840
KLPNGVSGLQ NFMNNVVPTD NLETASSATS LWPSQTDGLL HQGFPSSNFN QHQMFKDALP  900
DVEIQGVDPS SSALFEMNND GPLGFPIETE GLLGNALDSV KYQNYISTDD ENNYRMQKDA  960
RQEISTSMVS QSFGQSDMAF NSIDSAINDG ALLNRNSWPP APPPQRMRTF TKVYKRGAVG  1020
RSIDIGKYSG YGELNQALAR MFGIEGQLED RQRIGWKLVY TDHEDDVLLL GDDPWEEFVN  1080
CVRCIRILSP QEVQQMSLDG DLGNTVLPNQ ACSSSDGGNA WRPRGDQNSR NPSIGPFDQF  1140
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1612336745388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g03407.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570905.10.0auxin response factor 5
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLI1HX190.0I1HX19_BRADI; Auxin response factor
STRINGBRADI3G03407.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19