![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi3g02730.2.p | ||||||||
Common Name | BRADI_3g02730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 344aa MW: 36450 Da PI: 6.0554 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 66.7 | 4e-21 | 248 | 310 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elk+++rk +NRe+ArrsR+RK+ae+eeL +++++L++eN++L+ ele+ kke+++l+ ++ Bradi3g02730.2.p 248 ERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEVLKSENSSLRAELERVKKEYEELRLKN 310 89*********************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 3.3E-25 | 1 | 96 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 8.5E-25 | 123 | 230 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 5.7E-15 | 246 | 307 | No hit | No description |
Pfam | PF00170 | 1.4E-19 | 248 | 310 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 1.8E-19 | 248 | 312 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.15 | 250 | 313 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.38E-10 | 251 | 307 | No hit | No description |
CDD | cd14702 | 2.21E-25 | 253 | 303 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 255 | 270 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 344 aa Download sequence Send to blast |
MGSNDPSTPS KPSKVPEQEQ PPATTSGTTA PVYPEWPGFQ GYPAMPPHGF FPPPVAAGQA 60 HPYMWGAQHM VPPYGTPPPP YMMYPPGTVY AHPSTPGVHP FHYPVPTNGN LDPAGAAPGA 120 SEINGKNEPG KTSGPSANGI TSNSESGSDS ESEGSDANSQ NDSHSKENDV NENGSSQNGV 180 SHSSSNGIFN KTMPLVPVQS GAVIGGVAGP ATNLNIGMDY WGATGSSPLP AMRGKVPSGS 240 VRGEQWDERE LKKQKRKLSN RESARRSRLR KQAECEELGQ RAEVLKSENS SLRAELERVK 300 KEYEELRLKN ASLKEKLGEA GDSVPDMNEQ SDTNGGSHQQ KEA* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 250 | 257 | LKKQKRKL |
2 | 264 | 270 | RRSRLRK |
3 | 264 | 271 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi3g02730.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK365578 | 0.0 | AK365578.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2035D12. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316435.1 | 0.0 | uncharacterized protein LOC100826051 | ||||
Swissprot | P23922 | 0.0 | HBP1A_WHEAT; Transcription factor HBP-1a | ||||
TrEMBL | I1HWT2 | 0.0 | I1HWT2_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G02730.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32150.1 | 1e-49 | basic region/leucine zipper transcription factor 68 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi3g02730.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|