 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bradi2g62510.3.p |
| Common Name | BRADI_2g62510, LOC100844769 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
MYB |
| Protein Properties |
Length: 265aa MW: 30135.9 Da PI: 8.7151 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bradi2g62510.3.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 37 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed +lv v+++G ++W+ a+ g++R++k+c++rw +yl
Bradi2g62510.3.p 37 KGPWTEQEDMKLVWFVRLFGERRWDFLAKVSGLNRSGKSCRLRWVNYL 84
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 57.2 | 3.8e-18 | 90 | 134 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rgr++++E+ l v++++++G++ W++Iar m+ gRt++++k++w+++
Bradi2g62510.3.p 90 RGRMSPDEERLVVELHAKWGNR-WSRIARSMP-GRTDNEIKNYWRTH 134
89********************.*********.************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MKQTSKQQLG KTKKMAIEAG KKKKEECLSA AAGVVRKGPW TEQEDMKLVW FVRLFGERRW 60
DFLAKVSGLN RSGKSCRLRW VNYLHPDLKR GRMSPDEERL VVELHAKWGN RWSRIARSMP 120
GRTDNEIKNY WRTHTRKLKH KHRHHQEEEE STKVATSASA STSTSAATTS PSSTSSSSDV 180
EVVQEAASKE DEQQQLLCAG TMDDGQLLWN DDGIDAYASW SGATSSMMMV PSSPVWPWDD 240
HYCCPTDSLW GHDEVFEYKK MLHS*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1a5j_A | 2e-25 | 37 | 137 | 7 | 106 | B-MYB |
| 1gv2_A | 1e-25 | 37 | 137 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 4e-25 | 37 | 137 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 4e-25 | 37 | 137 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 1e-25 | 37 | 137 | 4 | 103 | C-Myb DNA-Binding Domain |
| 1msf_C | 1e-25 | 37 | 137 | 4 | 103 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JF951939 | 1e-112 | JF951939.2 Triticum aestivum clone TaMYB56 MYB-related protein mRNA, complete cds. |
| GenBank | JN191347 | 1e-112 | JN191347.1 Triticum aestivum MYB13-3 mRNA, complete cds. |
