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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g60020.1.p | ||||||||
Common Name | BRADI_2g60020, LOC100833261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 528aa MW: 55757.9 Da PI: 8.2481 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.3 | 2.8e-05 | 125 | 147 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Bradi2g60020.1.p 125 FVCEICHKGFQRDQNLQLHRRGH 147 89*******************88 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0015 | 210 | 232 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk++ +s+ k H +++ Bradi2g60020.1.p 210 WRCERCGKRYAVHSDWKAHSKLC 232 58*****************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.21E-7 | 124 | 147 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.0E-5 | 124 | 147 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.637 | 125 | 147 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.046 | 125 | 147 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 127 | 147 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 95 | 175 | 205 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.8E-4 | 198 | 230 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.21E-7 | 205 | 230 | No hit | No description |
SMART | SM00355 | 160 | 210 | 230 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MCACMSGCKA YPSCMPAMAC GGGAARECFS SGSASNTGEA VPGPGEDQFR VPYHGKPFLS 60 SPAAMGDLRH TAACAGNDEP NPLLPSTALP VPKKTKKKRS LPGTPDPSAE VIALSPTTLM 120 ATNRFVCEIC HKGFQRDQNL QLHRRGHNLP WKLRQRGSGS GSGEGPGSLP RKRAYVCPEP 180 SCVHHDPRRA LGDLTGIKKH FSRKHGEKKW RCERCGKRYA VHSDWKAHSK LCGSREYRCH 240 CGTLFSRRDS FVTHRAFCDA LAQENNKMAR PLSMATVASA LQGQGGQGQQ HGLLQPSAAS 300 DRTQDVGIDI DNNDTADGDG FGTDAKSPHL KMFSDTAAED DDNPLGCMLS SLGGAAPYSP 360 SPATMAGTKL SLLGLSGPSD SSMGFSPSGL ASMSATALLQ KAAQMGATTS SGYGVGLGST 420 MAGLACQPNP GPFEPMRPLG PYDGLPLRGA HVVGFDVGGL MPGQLYGDEA HDIGAMTRAV 480 RSMTKRESQM EPRQAEEDGR VVDYMGVQNQ TAFGGISPFA HHLDPWA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-30 | 206 | 269 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 9e-30 | 206 | 269 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g60020.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070390 | 1e-161 | AK070390.1 Oryza sativa Japonica Group cDNA clone:J023050E05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003567443.3 | 0.0 | protein indeterminate-domain 2 | ||||
TrEMBL | A0A0Q3GLR8 | 0.0 | A0A0Q3GLR8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G60020.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12554 | 25 | 34 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 3e-98 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g60020.1.p |
Entrez Gene | 100833261 |