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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bradi2g59440.2.p |
Common Name | BRADI_2g59440 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family |
Trihelix |
Protein Properties |
Length: 316aa MW: 34495.5 Da PI: 5.8031 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bradi2g59440.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 66.3 | 6.5e-21 | 13 | 91 | 1 | 76 |
trihelix 1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76
rWt++e+l+Li+a+r +e+r + g+ +W+ vs ++r++g+er+p qC+++w nl+++ kki +ekk+t++++
Bradi2g59440.2.p 13 RWTRHETLVLIQAKRATEQRAAAaaqGQPVRLKWAVVSGYCRRHGVERGPMQCRKRWGNLSWDLKKILVWEKKNTKTKT 91
8*******************997222456678*****************************************987776 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MAGATTPRSR LPRWTRHETL VLIQAKRATE QRAAAAAQGQ PVRLKWAVVS GYCRRHGVER 60 GPMQCRKRWG NLSWDLKKIL VWEKKNTKTK TSMEKEGEEE EEEEKKGEGQ DESSSSRPSF 120 WEMRGEQRRA RQLPSSFDRE VYDALVGAAA SVKLPPAESG EEMDLDDDED EDGGHQQIPM 180 PMPMPAQTPP PPPVLVMPIS ARMYVPPASS QHECSDPATE SAKKPGSDKN STSQQDSEAT 240 FGAGVGAEGT ATAATATTSV IGRQVTEALE RGNRVLAEQL EAQRASAESD REHRAALLAA 300 VNRLADAVSR IADKL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012609 | 2e-59 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |