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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g59137.4.p | ||||||||
Common Name | BRADI_2g59137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CAMTA | ||||||||
Protein Properties | Length: 794aa MW: 89344.4 Da PI: 6.887 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 159 | 9.4e-50 | 12 | 127 | 2 | 116 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 ++e k+rwlk+ e+++iL+nfe + ++++++++p+sgs++L+nr+++r+fr+DGy w++kk+gkt E+he LKv++v++l+cyYa++++n+t Bradi2g59137.4.p 12 QQEvKTRWLKPPEVLKILQNFELFPVQHKPPQKPPSGSWFLFNRRVLRNFRNDGYDWRRKKNGKTFAEAHEYLKVDTVKALNCYYAQADKNST 104 56779**************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhyle 116 fq+r+yw+L+ ++e+ivlvhy++ Bradi2g59137.4.p 105 FQKRIYWMLDPAYEHIVLVHYRD 127 *********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 69.435 | 8 | 134 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.0E-57 | 11 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 6.3E-46 | 15 | 127 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 8.78E-7 | 260 | 346 | No hit | No description |
Gene3D | G3DSA:2.60.40.10 | 2.2E-6 | 261 | 352 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 4.8E-13 | 261 | 345 | IPR014756 | Immunoglobulin E-set |
Pfam | PF13637 | 5.3E-9 | 468 | 520 | No hit | No description |
SuperFamily | SSF48403 | 1.51E-13 | 470 | 560 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.5E-14 | 470 | 568 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.273 | 471 | 531 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.92E-8 | 471 | 515 | No hit | No description |
PROSITE profile | PS50088 | 11.087 | 499 | 531 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 190 | 620 | 642 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.705 | 621 | 650 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 7.43E-7 | 624 | 705 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.0084 | 655 | 677 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.913 | 656 | 685 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0062 | 658 | 677 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.18 | 678 | 700 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.322 | 680 | 707 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0076 | 680 | 700 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 794 aa Download sequence Send to blast |
MQQQGFDIQK LQQEVKTRWL KPPEVLKILQ NFELFPVQHK PPQKPPSGSW FLFNRRVLRN 60 FRNDGYDWRR KKNGKTFAEA HEYLKVDTVK ALNCYYAQAD KNSTFQKRIY WMLDPAYEHI 120 VLVHYRDILE NGSASRADAY GSPGLTSELI GQRLNSCSPG SGEELSLENK ERHDVNTDEV 180 LPNDPIPVHE IRNEELDTCT NNVDIFNRLE PIEDNHAEGS HLYPNAIDVL KNSDTWLDED 240 QLESILQSAP VIVNESQWFH IHEVCPEWAF CSDSTKVVIA GDFLCNPSNS SWAILFGDVK 300 VPVENVQEGV IRCHTPPDLG AGKVRMCMVD ENEKPCSEAR EFEFVEKPIK STIDGNGKSC 360 SEAREFEFQQ KPGISGDGLS LLLNYVQMLF DGHGCGLFSK FRLPLPDVQC GFQVDPSDII 420 NRTCEKLDHE TTVTCVMEVM LNNKFEDWLS SKSEQNSEGN YLLPKKYHGV IHTIAALGYD 480 WALKPLLSSG VPINYRDANG WTALHWAARF GREQMVGVLL AAGAAAGALS DPTSEDPVAK 540 TPASIATAYG FDGLSAFLSE AQLTTHLHSL ESKENGNPID HTLGEGISNA VVRISDKCAH 600 VDGGTDDQLA LQDSLGAIRN AVQAAGRIQA TFRVFSLKKK HKMALREAGA ASRAMLDKAA 660 MSIQKNFRCW KKRKEFRKVR KYVIKIQARV RAHQERKKYK ELLQSVGILE KVMLRWFRKG 720 VGLRGFNTTA MPIDEDEGED IARVFRKERV ETAVNEAVLR VSAIVGSPLA RLQYRRMLEI 780 HQQAKHAHEK SVS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g59137.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316088.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X4 | ||||
TrEMBL | A0A0Q3KJF6 | 0.0 | A0A0Q3KJF6_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G59137.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-105 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g59137.4.p |