![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi2g59137.3.p | ||||||||
Common Name | BRADI_2g59137, LOC100825189 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 810aa MW: 90921 Da PI: 6.8131 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 158.9 | 9.7e-50 | 12 | 127 | 2 | 116 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 ++e k+rwlk+ e+++iL+nfe + ++++++++p+sgs++L+nr+++r+fr+DGy w++kk+gkt E+he LKv++v++l+cyYa++++n+t Bradi2g59137.3.p 12 QQEvKTRWLKPPEVLKILQNFELFPVQHKPPQKPPSGSWFLFNRRVLRNFRNDGYDWRRKKNGKTFAEAHEYLKVDTVKALNCYYAQADKNST 104 56779**************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhyle 116 fq+r+yw+L+ ++e+ivlvhy++ Bradi2g59137.3.p 105 FQKRIYWMLDPAYEHIVLVHYRD 127 *********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 70.527 | 8 | 134 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.0E-57 | 11 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 6.5E-46 | 15 | 127 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 9.01E-7 | 276 | 362 | No hit | No description |
SuperFamily | SSF81296 | 4.8E-13 | 277 | 361 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:2.60.40.10 | 2.2E-6 | 277 | 368 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF13637 | 5.4E-9 | 484 | 536 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 3.7E-14 | 486 | 584 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.55E-13 | 486 | 576 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.86E-8 | 487 | 531 | No hit | No description |
PROSITE profile | PS50297 | 15.273 | 487 | 547 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.087 | 515 | 547 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 190 | 636 | 658 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.705 | 637 | 666 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 7.7E-7 | 640 | 721 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.0084 | 671 | 693 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.913 | 672 | 701 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0063 | 674 | 693 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.18 | 694 | 716 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.322 | 696 | 723 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0078 | 696 | 716 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 810 aa Download sequence Send to blast |
MQQQGFDIQK LQQEVKTRWL KPPEVLKILQ NFELFPVQHK PPQKPPSGSW FLFNRRVLRN 60 FRNDGYDWRR KKNGKTFAEA HEYLKVDTVK ALNCYYAQAD KNSTFQKRIY WMLDPAYEHI 120 VLVHYRDILE GSISVSVLND SSTSNQNGSA SRADAYGSPG LTSELIGQRL NSCSPGSGEE 180 LSLENKERHD VNTDEVLPND PIPVHEIRNE ELDTCTNNVD IFNRLEPIED NHAEGSHLYP 240 NAIDVLKNSD TWLDEDQLES ILQSAPVIVN ESQWFHIHEV CPEWAFCSDS TKVVIAGDFL 300 CNPSNSSWAI LFGDVKVPVE NVQEGVIRCH TPPDLGAGKV RMCMVDENEK PCSEAREFEF 360 VEKPIKSTID GNGKSCSEAR EFEFQQKPGI SGDGLSLLLN YVQMLFDGHG CGLFSKFRLP 420 LPDVQCGFQV DPSDIINRTC EKLDHETTVT CVMEVMLNNK FEDWLSSKSE QNSEGNYLLP 480 KKYHGVIHTI AALGYDWALK PLLSSGVPIN YRDANGWTAL HWAARFGREQ MVGVLLAAGA 540 AAGALSDPTS EDPVAKTPAS IATAYGFDGL SAFLSEAQLT THLHSLESKE NGNPIDHTLG 600 EGISNAVVRI SDKCAHVDGG TDDQLALQDS LGAIRNAVQA AGRIQATFRV FSLKKKHKMA 660 LREAGAASRA MLDKAAMSIQ KNFRCWKKRK EFRKVRKYVI KIQARVRAHQ ERKKYKELLQ 720 SVGILEKVML RWFRKGVGLR GFNTTAMPID EDEGEDIARV FRKERVETAV NEAVLRVSAI 780 VGSPLARLQY RRMLEIHQQA KHAHEKSVS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi2g59137.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232758.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X3 | ||||
TrEMBL | A0A0Q3J001 | 0.0 | A0A0Q3J001_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G59137.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-105 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi2g59137.3.p |
Entrez Gene | 100825189 |