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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g59137.2.p | ||||||||
Common Name | BRADI_2g59137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | CAMTA | ||||||||
Protein Properties | Length: 821aa MW: 92484.9 Da PI: 6.7428 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 158.9 | 9.8e-50 | 12 | 127 | 2 | 116 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 ++e k+rwlk+ e+++iL+nfe + ++++++++p+sgs++L+nr+++r+fr+DGy w++kk+gkt E+he LKv++v++l+cyYa++++n+t Bradi2g59137.2.p 12 QQEvKTRWLKPPEVLKILQNFELFPVQHKPPQKPPSGSWFLFNRRVLRNFRNDGYDWRRKKNGKTFAEAHEYLKVDTVKALNCYYAQADKNST 104 56779**************************************************************************************** PP CG-1 94 fqrrcywlLeeelekivlvhyle 116 fq+r+yw+L+ ++e+ivlvhy++ Bradi2g59137.2.p 105 FQKRIYWMLDPAYEHIVLVHYRD 127 *********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 69.435 | 8 | 134 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.0E-57 | 11 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 6.7E-46 | 15 | 127 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 9.16E-7 | 287 | 373 | No hit | No description |
SuperFamily | SSF81296 | 5.0E-13 | 288 | 372 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:2.60.40.10 | 2.3E-6 | 288 | 379 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF13637 | 5.5E-9 | 495 | 547 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 3.7E-14 | 497 | 595 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.55E-13 | 497 | 587 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.80E-8 | 498 | 542 | No hit | No description |
PROSITE profile | PS50297 | 15.273 | 498 | 558 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.087 | 526 | 558 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 190 | 647 | 669 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.705 | 648 | 677 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.25E-6 | 651 | 732 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.0084 | 682 | 704 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.913 | 683 | 712 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0064 | 685 | 704 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.18 | 705 | 727 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.322 | 707 | 734 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0079 | 707 | 727 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 821 aa Download sequence Send to blast |
MQQQGFDIQK LQQEVKTRWL KPPEVLKILQ NFELFPVQHK PPQKPPSGSW FLFNRRVLRN 60 FRNDGYDWRR KKNGKTFAEA HEYLKVDTVK ALNCYYAQAD KNSTFQKRIY WMLDPAYEHI 120 VLVHYRDILE NGSASRADAY GSPGLTSELI GQRLNSCSPG SGEEVSSQIA TINNETTNTS 180 QFDWLRMLEM QLSLENKERH DVNTDEVLPN DPIPVHEIRN EELDTCTNNV DIFNRLEPIE 240 DNHAEGSHLY PNAIDVLKNS DTWLDEDQLE SILQSAPVIV NESQWFHIHE VCPEWAFCSD 300 STKVVIAGDF LCNPSNSSWA ILFGDVKVPV ENVQEGVIRC HTPPDLGAGK VRMCMVDENE 360 KPCSEAREFE FVEKPIKSTI DGNGKSCSEA REFEFQQKPG ISGDGLSLLL NYVQMLFDGH 420 GCGLFSKFRL PLPDVQCGFQ VDPSDIINRT CEKLDHETTV TCVMEVMLNN KFEDWLSSKS 480 EQNSEGNYLL PKKYHGVIHT IAALGYDWAL KPLLSSGVPI NYRDANGWTA LHWAARFGRE 540 QMVGVLLAAG AAAGALSDPT SEDPVAKTPA SIATAYGFDG LSAFLSEAQL TTHLHSLESK 600 ENGNPIDHTL GEGISNAVVR ISDKCAHVDG GTDDQLALQD SLGAIRNAVQ AAGRIQATFR 660 VFSLKKKHKM ALREAGAASR AMLDKAAMSI QKNFRCWKKR KEFRKVRKYV IKIQARVRAH 720 QERKKYKELL QSVGILEKVM LRWFRKGVGL RGFNTTAMPI DEDEGEDIAR VFRKERVETA 780 VNEAVLRVSA IVGSPLARLQ YRRMLEIHQQ AKHAHEKSVS * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g59137.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316087.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X2 | ||||
TrEMBL | A0A0Q3GJH0 | 0.0 | A0A0Q3GJH0_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G59137.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 1e-105 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g59137.2.p |