PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g57800.5.p
Common NameBRADI_2g57800
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 423aa    MW: 44997.2 Da    PI: 8.2854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g57800.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11356401655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L++l+P+     +k  + +++L  Av+YIk Lq
  Bradi2g57800.5.p 356 SIAERERRTRISKRLRKLQDLVPNM----DKQTNTSDMLDIAVDYIKVLQ 401
                       689*********************7....688***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.903350400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-15353411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.18E-12354405No hitNo description
Gene3DG3DSA:4.10.280.101.1E-14355411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-9356401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11356406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MGQTETTPAR VPCACRCTVV QVPEEAGDAL TQPLSRTRTP YSKQSRKRAM NRLTPAHHGR  60
AATMHPPQHH HGGLARYGSA PGAFLAALAD SVVASPPPPP VVSRFFSGGG ETSSGLASCE  120
SSCHTDGRLQ RAYGGSGEII HHVPQPPPHP APQSGLLRHS SSPAGLLSRL MADPHGNNGG  180
MGNIGGYTHS QAAGNVDAMA QHRRLSSQWS FSRQQQDMIM PQISEMGMAL ATMPADIGES  240
IATGGNSSSD GAGGNAQSSS YGGGGLSRNF SMSSWDDTNS IMFSSPARSS KKAKVMVDLD  300
HADDGMVTSF SNIDSQFGVS SSSLEMPGMD DYLQLQQDSV ACRVRAKRGC ATHPRSIAER  360
ERRTRISKRL RKLQDLVPNM DKQTNTSDML DIAVDYIKVL QDQIEKLKQD QGNCSCPGNQ  420
NC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g57800.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564851.10.0transcription factor bHLH128
TrEMBLA0A0Q3GIV00.0A0A0Q3GIV0_BRADI; Uncharacterized protein
STRINGBRADI2G57800.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-44bHLH family protein