PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g57336.1.p
Common NameBRADI_2g57336
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 747aa    MW: 86093 Da    PI: 9.6674
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g57336.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.44.9e-08723745426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       +lCr+++++ +C+y ++CkF+Hg
  Bradi2g57336.1.p 723 KLCRYYQQNLWCPYQENCKFSHG 745
                       79********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.24E-6718745IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.413720746IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-6723745IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4723745IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MATAAATRAD LPPAEDDPLE GEESEEEEEV ESDDGSDAAS LADLCDEGSD EDPSFDPAAD  60
SGPEGEAKLW SGMGRLSISA RKERKGSMAP KMGKEDTDLL VMVDKLMRDG QSEKLKVYEC  120
KAYLRMHKLR LSGKREVLLC RIREHIEVKN NGAVKYPVSS FVLNCKGDAC KGDVVIFEQN  180
IYKRKKGAPR GRGDRGRLCG QRTLCGKRTN AGRIIKESYG TAKQQHTFTI EILWSEGYKP  240
WPPLHPLLIK GRNLYKDKTM RQPWPDEQKR SRVLQEKHAR GFIARKSRDV RIHDKEIEKM  300
RRFNRIKENR SKGKEDINQK SSQKPVSTNT VCQRSDEGRI PSLQHGEPGN TMQHHISSKQ  360
NPANHLVNQQ FPCWQHYNEV LPQEGAMRTS RPESIEHQVP SVQQGEPEKT RQQQILSRPA  420
PAQQIFKHPQ QQNNHRPDPA QQMFKPPQEH GNGQQHNLQQ GTTKSFSILG QAPGIHLGGP  480
GNARQLQKSP KPTPVRQIMN QAQPPNYQHR NEVILEEAAK KTCRVDSVDH RNGTYHNTDS  540
VKAPCVQHGV SGNAWQQQKS SKPTPIDQIK NLPQSPVHQY QRGVLRQEVT KRTYRVESIA  600
HQNNTYQNTE YHEPAFQPQG AKQQQHKQSD HQRLQPLRPK NQDFSSRNQG EDYHRRRQMT  660
QEQHHTEQRH HWNQYGRRQM AQDQYQPQQI HHQNQQDSWS MNQNHFPHDY QNYQYAQQVP  720
RLKLCRYYQQ NLWCPYQENC KFSHGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g57336.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3749661e-115AK374966.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567347.10.0zinc finger CCCH domain-containing protein 62
SwissprotQ338N20.0C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLA0A2K2DGD90.0A0A2K2DGD9_BRADI; Uncharacterized protein
STRINGBRADI2G57335.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131072022
Representative plantOGRP451266
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]