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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bradi2g57000.1.p |
Common Name | BRADI_2g57000, LOC100823553 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family |
MIKC_MADS |
Protein Properties |
Length: 210aa MW: 24112.6 Da PI: 8.2635 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bradi2g57000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 92.6 | 1.9e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien nrqvtfskRr+gilKKA+E+SvLCdaev v+ifss gklye++s
Bradi2g57000.1.p 9 KRIENPANRQVTFSKRRHGILKKAKEISVLCDAEVGVVIFSSAGKLYEFCS 59
79***********************************************96 PP
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2 | K-box | 77.4 | 3.7e-26 | 71 | 166 | 1 | 96 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93
yq +sgk l+++k++sl+ e++++kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l+++ +k++e++ + i+ ++ e+e++ +
Bradi2g57000.1.p 71 YQINSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTNVHEKQMEHWDRLIKSGKMLEDENKLLAFK 163
56678888********************************************************************************99999 PP
K-box 94 Lrk 96
L++
Bradi2g57000.1.p 164 LHQ 166
987 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 32.31 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-33 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.86E-40 | 2 | 80 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.0E-17 | 82 | 164 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.083 | 84 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 210 aa
Download sequence Send
to blast |
MGRGKIEIKR IENPANRQVT FSKRRHGILK KAKEISVLCD AEVGVVIFSS AGKLYEFCSS 60 KTSLSRILEK YQINSGKILW DEKHKSLSAE IDRIKKENDN MQIELRHLKG EDLNSLQPKE 120 LIMIEEALDN GLTNVHEKQM EHWDRLIKSG KMLEDENKLL AFKLHQHDIA LSGSLRDLEL 180 GYHTERDFAA QMPITFRVQP SHPNLQENN*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 3e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-20 | 1 | 71 | 1 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF469315 | 0.0 | KF469315.1 Brachypodium distachyon MADS-box transcription factor 20 mRNA, complete cds. |