PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g56910.1.p
Common NameBRADI_2g56910, LOC100821689
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 572aa    MW: 63858.7 Da    PI: 4.6627
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g56910.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.22.1e-1292025712374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cA+a+s+ +  +aq++++ l++++s +gdp +R+aay++e+Laar++ s++++ykal++++ +   +  +l+a+++++e++P+++f+
  Bradi2g56910.1.p 202 KQLLFDCATALSEYNIDEAQTIITDLRQMVSIQGDPSHRIAAYLVEGLAARIVASGKGIYKALTCKDPP---TLYQLSAMQILFEICPCYRFG 291
                       589*****************************************************************9...89999**************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                       +++aN aIlea +geer+HiiDfdi+qG Q+++L+q + + +++p +lRiTgv+++e++      l+ +g+rL+k+Ae +g++fef++ va +
  Bradi2g56910.1.p 292 FMAANYAILEACKGEERMHIIDFDINQGSQYITLMQFMKNDANKPRHLRITGVDDHETVqrTVGGLKVIGQRLEKLAEDCGISFEFRA-VAAN 383
                       *******************************************************9988778889***********************.799* PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       + d+++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++F++rf e  +yysalfdsl+a+lpre
  Bradi2g56910.1.p 384 IGDVTPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFVTRFREVYDYYSALFDSLDATLPRE 476
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       s +r++vEr++l+reivn++aceg +r+er e ++kWr+r+++aGF p p+++++   +++ll+ + ++ y+ ee++g l +gW +++L++ S
  Bradi2g56910.1.p 477 SPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMTMAGFVPCPFNNNVIGGIRSLLNSYCDR-YKFEEDHGGLHFGWGEKTLIVSS 568
                       *******************************************************************66.*********************** PP

              GRAS 372 aWr 374
                       aW+
  Bradi2g56910.1.p 569 AWQ 571
                       **6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.544175552IPR005202Transcription factor GRAS
PfamPF035147.4E-127202571IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MSFVGRVDPS TTYADNIYVH KFGTPNSNFA ARRFGSDTQL FHYGPEPFNS EDYEHMGFTE  60
APSSAFQNSY YNQQASLTPY HVMANGRSPS VSDNMANSCS DTAKDSPVFS NVSQQNSQSI  120
SDNHSSGLEV EFDPEIRLKL QELEHALLDD GDDILFEISQ TGCINDEWAD PMKDVLLPNS  180
PKESESSISC AGSNNGEART PKQLLFDCAT ALSEYNIDEA QTIITDLRQM VSIQGDPSHR  240
IAAYLVEGLA ARIVASGKGI YKALTCKDPP TLYQLSAMQI LFEICPCYRF GFMAANYAIL  300
EACKGEERMH IIDFDINQGS QYITLMQFMK NDANKPRHLR ITGVDDHETV QRTVGGLKVI  360
GQRLEKLAED CGISFEFRAV AANIGDVTPA MLDCRPGEAL VVNFAFQLHH LPDESVSIMN  420
ERDQLLRMVK GLQPKLVTLV EQDANTNTAP FVTRFREVYD YYSALFDSLD ATLPRESPDR  480
MNVERQCLAR EIVNILACEG PDRVERYEVA GKWRARMTMA GFVPCPFNNN VIGGIRSLLN  540
SYCDRYKFEE DHGGLHFGWG EKTLIVSSAW Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6220857026378Protein SCARECROW
5b3h_A8e-6320857025377Protein SCARECROW
5b3h_D8e-6320857025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g56910.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496460.0AK249646.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf47j02, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564775.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLI1HU000.0I1HU00_BRADI; Uncharacterized protein
STRINGBRADI2G56910.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Representative plantOGRP82621116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]