PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g54720.3.p
Common NameBRADI_2g54720, LOC100824067
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 333aa    MW: 35332.8 Da    PI: 5.9118
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g54720.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-31136192258
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                        Dgy+WrKYGqK++k++++prsYY+Cts++C++kk+ve+s++dp+++++tYeg H h
  Bradi2g54720.3.p 136 TDGYKWRKYGQKSIKNNPHPRSYYKCTSSRCSAKKHVEKSTHDPEMFTVTYEGLHLH 192
                       6******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-30129193IPR003657WRKY domain
PROSITE profilePS5081127.473130195IPR003657WRKY domain
SuperFamilySSF1182905.75E-26133194IPR003657WRKY domain
SMARTSM007743.7E-35135194IPR003657WRKY domain
PfamPF031062.4E-25137192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGDVLQAEAV APAADEAGIW PGELDEQLIS DLLSDDSLLA PVVDPADDSE QHYCPRDNTG  60
SGAATAAVPP AEAGRSLCSV YSGPTITDIQ KALSSRPHPP RYGRRYSSLY LYGAASAAPE  120
SRRTATVRSC GGKMPTDGYK WRKYGQKSIK NNPHPRSYYK CTSSRCSAKK HVEKSTHDPE  180
MFTVTYEGLH LHGPQPLSRH LQPPPGPTTT DVAVVNKKAR LSPNSDDNHG DDDSGAGIGC  240
GARWPSKETC GVDDDDDVGG GGSSKLQGRQ KGRAHDAVIA VDSSDGRWSA ASSVPHADDA  300
AAAVFSSDPP PAANWYCLDL PWSPEGHFPW TI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-191341921371WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g54720.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016161e-112FP101616.1 Phyllostachys edulis cDNA clone: bphyem119j23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232546.10.0probable WRKY transcription factor 20 isoform X2
TrEMBLA0A0Q3JDS10.0A0A0Q3JDS1_BRADI; Uncharacterized protein
STRINGBRADI2G54720.11e-176(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-24WRKY DNA-binding protein 49