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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g54670.7.p | ||||||||
Common Name | LOC100843948 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 806aa MW: 88928.4 Da PI: 6.1927 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 388.7 | 6.5e-119 | 430 | 799 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++lL++cA+ vs +d + a++lL++++++as +gd qRla++f+++L+arla+++s++yk+++ s+ + +++l+a++l+ ++P+ k+s Bradi2g54670.7.p 430 ETLLIHCAQSVSIDDRRSATELLKQIRQHASANGDGDQRLAHCFANGLEARLAGNGSQIYKSFTISRLA---CTDVLKAYQLYLAACPFKKIS 519 789****************************************************************99...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 h aNq+I++ave++++vHiiD++i +G+QWp+L+q L++R++gpp+lRiTg++ p++g +e+++etg+ L+++A++++vpfef+ +a++ Bradi2g54670.7.p 520 HYFANQTIMNAVEKAKKVHIIDYGIYYGFQWPCLIQRLSTRAGGPPKLRITGIDTPQPGfrPAERIQETGRYLSDYAQTFKVPFEFQG-IASQ 611 ****************************************************************************************.7*** PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 +e++++e+L+++++E+l+Vn++++ ++l+desv es+r+ vL+++++++P+v+++ + ++n++ F+ rf eal +ysa fd+lea++pr+ Bradi2g54670.7.p 612 FEAVQIEDLHIEKDEVLIVNCMFKFKTLMDESVVAESPRNIVLNTIRKMKPHVFIHGITNGSYNAPFFVSRFREALFHYSAAFDMLEANIPRD 704 ********************************************************************************************* PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 +e+r +E +l++re+ nv++ceg er er et+++W+ r ++aGFk++pl+++++k a+ ++ ++++ + ++e++ +l++gWk+r L+++S Bradi2g54670.7.p 705 NEQRLLIESALFNREAINVISCEGLERMERPETYKQWQTRNQRAGFKQLPLNQDIMKRAREKVKCYHKN-FIIDEDNRWLLQGWKGRILFALS 796 ****************************************************************99966.*********************** PP GRAS 372 aWr 374 W+ Bradi2g54670.7.p 797 TWK 799 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.803 | 403 | 780 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-116 | 430 | 799 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 806 aa Download sequence Send to blast |
MVMDATLHDW SAPLPGSNSK CDGHLPIYPQ IPAANGFTVE ELEALLVLPS DGVDAEGYLN 60 AAAASTDSAS PPREVSVSSA PPPAGPGQAP PDDSEGFSDI VLGYINRMLM AEDIDEKFEH 120 YPSLLSAEKP FLDILADHPP YSGGSTVDSP DGSSVTNSCN SLGSCHCAAP SSGLGQTPPF 180 LEFPTAAFLQ PPRLYQDPSP ESCVVDAGGA WPYDPTEFYQ LHTNPVPETL LSQSSSFASS 240 NGSSVAFSEG FESWLSTAGV VPDVGLSNFV LQNQQAAQFS RGFEEASRFL PVESKLVIDV 300 ESLLSVASLQ AGVKEEKFVE VKTEKAGAEV AVHRGKKHFY GDDLDVEEGR CCKHSAPAII 360 DSDHLVREMM DKVLLCNGET CSKGVKELRE ALRHDVANHP SGAHGKGSGH GKGRGKKQSK 420 QPKKEVVDLE TLLIHCAQSV SIDDRRSATE LLKQIRQHAS ANGDGDQRLA HCFANGLEAR 480 LAGNGSQIYK SFTISRLACT DVLKAYQLYL AACPFKKISH YFANQTIMNA VEKAKKVHII 540 DYGIYYGFQW PCLIQRLSTR AGGPPKLRIT GIDTPQPGFR PAERIQETGR YLSDYAQTFK 600 VPFEFQGIAS QFEAVQIEDL HIEKDEVLIV NCMFKFKTLM DESVVAESPR NIVLNTIRKM 660 KPHVFIHGIT NGSYNAPFFV SRFREALFHY SAAFDMLEAN IPRDNEQRLL IESALFNREA 720 INVISCEGLE RMERPETYKQ WQTRNQRAGF KQLPLNQDIM KRAREKVKCY HKNFIIDEDN 780 RWLLQGWKGR ILFALSTWKP NHHSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-50 | 433 | 799 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g54670.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003564590.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | I1HTA2 | 0.0 | I1HTA2_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G54670.2 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-172 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g54670.7.p |
Entrez Gene | 100843948 |