PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g51310.4.p
Common NameBRADI_2g51310, LOC100837476
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LBD
Protein Properties Length: 237aa    MW: 25210.3 Da    PI: 6.8545
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g51310.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.41.8e-36441491101
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C aCk+lrr+Ca++Cv+ap+f      ++ +++fa+vh++FGasnv kll+++p   r+d++++++yeA+ar+ dPvyG+vg+il+lq+q++
  Bradi2g51310.4.p  44 PCGACKFLRRRCAPGCVFAPHFsggggRERGAAQFAAVHRVFGASNVAKLLSRVPVALRRDTARTVCYEAQARIADPVYGCVGTILALQHQVA 136
                       7*********************8887444559************************************************************* PP

            DUF260  89 qlkaelallkeel 101
                        l+ +l+ l+++l
  Bradi2g51310.4.p 137 LLQGQLSILQSQL 149
                       *******999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.93243149IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-4044146IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MQGAPDQPPC SKHAVTRTAG AAPGQQQQQR AEKEEASSAG PGAPCGACKF LRRRCAPGCV  60
FAPHFSGGGG RERGAAQFAA VHRVFGASNV AKLLSRVPVA LRRDTARTVC YEAQARIADP  120
VYGCVGTILA LQHQVALLQG QLSILQSQLF NYRLAFASTH PDADHFAALQ PAYSAGSAPS  180
QMVTYDDLPQ AVDFMDVEPQ MRGLESLQLS QPPHLEENES QDMSPFSDNV GQQPQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-35371524114LOB family transfactor Ramosa2.1
5ly0_B5e-35371524114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g51310.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567161.11e-172LOB domain-containing protein 20
RefseqXP_024315860.11e-172LOB domain-containing protein 20
RefseqXP_024315861.11e-172LOB domain-containing protein 20
TrEMBLI1HS391e-171I1HS39_BRADI; Uncharacterized protein
STRINGBRADI2G51310.11e-171(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-38LOB domain-containing protein 20