PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g50193.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 461aa    MW: 49133 Da    PI: 7.1355
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g50193.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.13.9e-35135241189
               TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec.eaesssssasns 85 
                       aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai el++        ++++a+e  ++e+++ s+s  
  Bradi2g50193.1.p 135 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIEELPDRpdegvapPAEPAHEQtSTEQQVTSTS-- 225
                       689**************************************************************98885553333322222222222222.. PP

               TCP  86 ssg..............k 89 
                         +               
  Bradi2g50193.1.p 226 --SygfgnnnpgpgamsT 241
                       ..1234444455655541 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.1E-32137252IPR005333Transcription factor, TCP
PROSITE profilePS5136932.615138196IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MYRQCSLKLN TRHVLFEVLL KLEEDKNQLS RGLDPWNNPT GATSTLHYLL QEKERAQAQE  60
QLQIYHHHQQ QAASAGFTSF LQQHQQHRRQ HQAATKGGSG DGSRSSGEST PVAVDAAQLV  120
AAATAFGSGR IVRSAAGRKD RHSKVCTARG LRDRRVRLAA HTAIRFYDVQ DRLGYDRPSK  180
AVDWLIRNAK AAIEELPDRP DEGVAPPAEP AHEQTSTEQQ VTSTSSYGFG NNNPGPGAMS  240
TSSFLHSLGG GAADQVSDNV KSLFPSSSNA NEEYGRGSPP DLLSRTTSSQ PSPQELCLTL  300
QSNNNNIFGH DGHHGVNVMS NAGGVPGWPD HVQRMPPWHQ HASENNGAGE QGGRGDGGGY  360
MFGMPPPRQG ALDQSGQLFS SHGEPLQSSG GGGGWAASAR AWLDPLAAIG SQPTALSGPH  420
LGLSHLVAGG GGFMGFLAPA AQRLHLQGDE EQGSEVMRRD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-20143197155Putative transcription factor PCF6
5zkt_B7e-20143197155Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351358GGRGDGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g50193.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3594353e-99AK359435.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1096P14.
GenBankAK3616753e-99AK361675.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1146F05.
GenBankAK3617483e-99AK361748.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1148B16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567128.10.0transcription factor PCF7
SwissprotQ8LT051e-135PCF7_ORYSJ; Transcription factor PCF7
TrEMBLA0A2K2DF040.0A0A2K2DF04_BRADI; Uncharacterized protein
STRINGBRADI2G50190.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120562330
Representative plantOGRP1436733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.37e-36TCP family protein