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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g50070.1.p | ||||||||
Common Name | BRADI_2g50070, LOC100840732 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | VOZ | ||||||||
Protein Properties | Length: 551aa MW: 61906 Da PI: 5.2833 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 427.7 | 1.8e-131 | 255 | 472 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwna 92 p+p+afl+pkcalwdc+rpaqgse++qdycs++ha+la++e g+pgt+pv+rp+gidlkdg+lfaalsak+qgk+vgip+cegaatakspwna Bradi2g50070.1.p 255 PAPAAFLRPKCALWDCPRPAQGSERWQDYCSMYHAELAVKEeGPPGTMPVIRPRGIDLKDGPLFAALSAKIQGKHVGIPVCEGAATAKSPWNA 347 89*************************************9879************************************************** PP VOZ 93 aelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrl 185 +elfdl ++ege+irewlffdkprrafesgnrkqrslpdy grgwhesrkqvmk+fgglkrsyymdpqpsss+ewhlyeyein++da+alyrl Bradi2g50070.1.p 348 PELFDLYIFEGESIREWLFFDKPRRAFESGNRKQRSLPDYGGRGWHESRKQVMKDFGGLKRSYYMDPQPSSSYEWHLYEYEINDCDAFALYRL 440 ********************************************************************************************* PP VOZ 186 elklvdekksakgkvskdsladlqkklgrlta 217 e+k++d+kk+ak+k++++sl+++q++++rl+a Bradi2g50070.1.p 441 EFKSSDAKKNAKSKLACNSLNEIQQQMVRLSA 472 ******************************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MRKGSSRSGS ARHQQFRARA KTRVDDLQEM FSGLQYARKE ARSTDAVVLE AQLHQMLREW 60 RAELSAPSPA SSLQQGNDRE LSGPPSDTLR LLQLAAAEEE EDDATSKLVE QQPPSSANQA 120 HKHAQAVQDM KPEPREEVAP SLTVAQQPPS LDQEVMTTGG GMPTPATAVF HDQMYYVNQE 180 LTVEDFLYGD DYKINLPGYN PDVHSNLEGI GHLEYPQFNL PQELPSNVYI DMNNYGQNAG 240 DVFLHMSDLL ATMSPAPAAF LRPKCALWDC PRPAQGSERW QDYCSMYHAE LAVKEEGPPG 300 TMPVIRPRGI DLKDGPLFAA LSAKIQGKHV GIPVCEGAAT AKSPWNAPEL FDLYIFEGES 360 IREWLFFDKP RRAFESGNRK QRSLPDYGGR GWHESRKQVM KDFGGLKRSY YMDPQPSSSY 420 EWHLYEYEIN DCDAFALYRL EFKSSDAKKN AKSKLACNSL NEIQQQMVRL SADSPVENKR 480 AARARTKDVN MNIYSVQNNT IQGNDTNAYQ TVSQVDQMTY LNGNVVYGPH LPYGYSTERS 540 DFYWNTNDGA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g50070.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241765 | 0.0 | AK241765.1 Oryza sativa Japonica Group cDNA, clone: J065205E23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003569827.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-157 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | I1HRM9 | 0.0 | I1HRM9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G50070.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2343 | 38 | 88 | Representative plant | OGRP2327 | 13 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-120 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g50070.1.p |
Entrez Gene | 100840732 |
Publications ? help Back to Top | |||
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