PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g49860.3.p
Common NameBRADI_2g49860, LOC100836030
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 439aa    MW: 48860.9 Da    PI: 5.3527
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g49860.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.5e-34131032101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+ye++++++++ ++sw+ +g+sfvv  + +f +++LpkyFkh+nf+SFvRQLn+YgF+kv+ e+         weF++++F +g+++ l
  Bradi2g49860.3.p  13 FLTKTYEMVDEPATDAVVSWTPSGTSFVVASQADFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQ---------WEFANEEFIRGQRHRL 96 
                       9***************************************************************9998.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r+k
  Bradi2g49860.3.p  97 KNIHRRK 103
                       *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-609102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-339102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.6E-3710102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3013102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-211336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-215163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-216476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDPGGGAASL PPFLTKTYEM VDEPATDAVV SWTPSGTSFV VASQADFCRD LLPKYFKHNN  60
FSSFVRQLNT YGFRKVDPEQ WEFANEEFIR GQRHRLKNIH RRKPIFSHSS HTQGAGPLVD  120
SERRDYEEEI ERLKCDNAAL TSELEKNAEK KIDMEKRMQA LEDKLFAVED QQTNLICYVR  180
DIVKEPGFLS SFVQQSDHSR KKRRLPKPIS FHEDTSTQGN QIMHRDLTNS PAHELSRESF  240
DKMESSLNSL ENFLREATEA FGNGISYDCD IPGPSAVVLT ELHLSGESDP HAPSPPSMMH  300
TSSAGVGDSH SSRGIAESTS CTESPPLPQT HSRADSRAKV SEIDVNLEPA VTETGPSRDQ  360
PGQDPPATAA AGANDGFWQQ FLTEQPGSSV AHQEAQSERR DREADQAKNG DRANCWWGKK  420
NIEQMTEKLG HLTSAEKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-28110216129Heat shock factor protein 1
5d5v_B7e-28110216129Heat shock factor protein 1
5d5v_D7e-28110216129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g49860.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569811.10.0heat stress transcription factor A-4b
SwissprotQ94J160.0HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLI1HRK20.0I1HRK2_BRADI; Uncharacterized protein
STRINGBRADI2G49860.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-85heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]