PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g47810.1.p
Common NameBRADI_2g47810, LOC100822019
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 398aa    MW: 40831.3 Da    PI: 7.4635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g47810.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32.1e-06293333954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR+r+ +++  L++l+P        K++ a++L +A  Y+k L
  Bradi2g47810.1.p 293 ARLRRERVSDRLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 333
                       599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.411284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-13290346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-10290338No hitNo description
Gene3DG3DSA:4.10.280.103.2E-10293347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDIFGWAGAG SQHEDVYLQP RPSGQLMSSS CGRFDMDDAF FGQLQCVDGV GTGGAEGVAT  60
ACQVSSSGYG AAAGDPMGFL SSGAGGDVFA SVDGAGAGAH DGLLDSAVAF SRVLACGDPG  120
AGVPNGAMFS SGGHSGTTTV CNISSGDSNN NYSGTGHDNN EVASPTSTIL SPTSLLPNSK  180
TTCPKRKLPD VVGYPATTLL TPPQPQPLPR PGGAKRRALT TTTSISFGHH DMTNAAGGYE  240
PDVEAMAQVK EMIYRAAAMR PVSLVTAEAG AAASAKPRRK NVRISSDPQT VAARLRRERV  300
SDRLRVLQKL VPGGSKMDTA SMLDEAASYL KFLRSQVQAL ETGNGSMATA GTGRLQQSYY  360
SSNSNNTTGF LGFARNNNIS AFGNPNNGNA TNNSLLQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280KPRRKN
2293298RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g47810.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554551e-111AK355455.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1020N05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567042.10.0uncharacterized protein LOC100822019
RefseqXP_024315232.10.0uncharacterized protein LOC100822019
TrEMBLI1HQU00.0I1HQU0_BRADI; Uncharacterized protein
STRINGBRADI2G47810.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-35bHLH family protein