PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g46020.1.p
Common NameBRADI_2g46020
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 350aa    MW: 37717.9 Da    PI: 5.9084
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g46020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.79.6e-19211558126
               NAM   8 hPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkd 89 
                       +P+d+el++ +L+++v++        ++  +i+e+d+y+++P +L +      ++++e+ wyfFs  + k  +g+r++     +g W++   +
  Bradi2g46020.1.p  21 QPSDQELLSSFLRERVSSGAgsdknSSCGGFIHEADVYSAHPAELTRrhgaaLASNGEEAWYFFSAVRAKG-SGRRARTvDSGEGCWHSEAGS 112
                       7***************998866554444448**************8545664444477899***9987765.56666654567999******* PP

               NAM  90 kevlsk......kgelvglkktLvfykgrapkgektdWvmhey 126
                       k+v+s+      +g l g ++ + f ++++   +++ W+m e 
  Bradi2g46020.1.p 113 KPVVSAhlrgggGGGLLGHRQNFSFVTKEDGVRVRSGWLMVEL 155
                       ****998988877788**********99999999******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.59914173IPR003441NAC domain
SuperFamilySSF1019414.71E-2821173IPR003441NAC domain
PfamPF023651.9E-1121155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MVASRRPKVP QRRNAFALDA QPSDQELLSS FLRERVSSGA GSDKNSSCGG FIHEADVYSA  60
HPAELTRRHG AALASNGEEA WYFFSAVRAK GSGRRARTVD SGEGCWHSEA GSKPVVSAHL  120
RGGGGGGLLG HRQNFSFVTK EDGVRVRSGW LMVELGLHGD GQDEVTICKV YFSPRTAAKN  180
QRKKPALSSS SSSSATRKRK VAETTTPAPA GQRRRHGTPE AAAASSGSEM VVDDPVVAVA  240
PPGEPEKAST ADDEPGGVVG ALKRFLVSLR EERGIIVEED YDRPPENVIV QDPSLPSSFT  300
ELLLNGPDDE DEWPTVVDSI PDPDVVVRRD RAQEPVIMFL TFDEMYALPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181199RKKPALSSSSSSSATRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g46020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193093.16e-86NAC domain-containing protein 92-like
TrEMBLA0A0Q3GF840.0A0A0Q3GF84_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI2G46020.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Representative plantOGRP1601833