PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g45090.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 390aa MW: 42336.6 Da PI: 8.4023 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 48.2 | 1.7e-15 | 315 | 340 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yGd+C+FaHg Bradi2g45090.5.p 315 FKTELCNKWEETGACPYGDQCQFAHG 340 79***********************9 PP | |||||||
2 | zf-CCCH | 19.9 | 1.3e-06 | 353 | 378 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr + + C+yG rC+F H+ Bradi2g45090.5.p 353 YKTEVCRMVLNGQVCPYGHRCHFRHS 378 9**********99**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-18 | 309 | 347 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-10 | 311 | 346 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-10 | 314 | 341 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.601 | 314 | 342 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-12 | 315 | 340 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-12 | 348 | 378 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-8 | 348 | 380 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.0E-6 | 352 | 379 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.014 | 352 | 380 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MPAPVYPRPS SSSPHLSETL SLHLIERQQK HTVVCGRKSS NQSAMQEALV SPAANADRLR 60 SAFELKAYAF GDQRLSSYLP ASGGDDALAL YRCTSPFSPS LGFSSPSPLA TSVSLSPSSS 120 ASLVDDDGDY SAADATGHRL QLARLALQCQ EVAGRYELCL SHLAEAVDEA AALRRENAEL 180 RAANTDLVHR LALLGGKQTA AIAIADDLRR FRGDHKVAVA ERSPETTKLA SMLPKSISVR 240 SNGYLKMNQQ QPAPAAPAAY NRKPRTSTPT NPSPRAYVGA DGGGKKGGEE QKQQLQDKEE 300 QEAAAELDVY NQGMFKTELC NKWEETGACP YGDQCQFAHG VAELRPVIRH PRYKTEVCRM 360 VLNGQVCPYG HRCHFRHSLT PAERLLRRP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 4e-22 | 315 | 378 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g45090.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360544 | 1e-125 | AK360544.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120C13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232086.2 | 0.0 | zinc finger CCCH domain-containing protein 9 isoform X2 | ||||
Swissprot | A2ZVY5 | 1e-115 | C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9 | ||||
TrEMBL | A0A2K2DDZ7 | 0.0 | A0A2K2DDZ7_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G45090.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 2e-45 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g45090.5.p |