PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g44050.1.p
Common NameBRADI_2g44050, LOC100824797
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 336aa    MW: 36787.2 Da    PI: 5.025
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g44050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.95.7e-32211122102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       F+ k+y+++ +++++ li+w  ++nsfvv d   f++ +Lp +Fkh nf+SFvRQLn+YgF+kv+ ++         weF+h+sF +g+++ll
  Bradi2g44050.1.p  21 FVAKTYQMVCEPRTDALIRWGGENNSFVVADVAGFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDR---------WEFAHESFLRGQTHLL 104
                       9********************999*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                        +i r+k+
  Bradi2g44050.1.p 105 PRIVRRKK 112
                       *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.2E-4917110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.9E-3417110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.71E-3218110IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-2721110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-152144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-155971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-157284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDGLHTELAL GLIGQLQTAP FVAKTYQMVC EPRTDALIRW GGENNSFVVA DVAGFSQLLL  60
PCFFKHGNFS SFVRQLNTYG FRKVHPDRWE FAHESFLRGQ THLLPRIVRR KKRGEGGGSA  120
SCSSATIDSG HEPQHVASAS STGDELDLDD DEEEEGSEAV LLEEVQRLRR EQTAIGEQLA  180
RMSRRLQATE RRPDQLMSFL TRLADEDSSV QLLEQAAAEK KRQRMQQMQM QFTPSRDFAA  240
PSSPSPIALR PPPPRPPAVI DDAAMVDGVW RWAEEQKPAR RSITTSEQPA ASSGAQQVPE  300
FEGGGGSGVG VGLTDDGGAA AETPFPFCLL GQCFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-21311011129Heat shock factor protein 1
5d5v_B3e-21311011129Heat shock factor protein 1
5d5v_D3e-21311011129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g44050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566902.10.0heat stress transcription factor C-1a
RefseqXP_024314176.10.0heat stress transcription factor C-1a
SwissprotQ6VBA41e-117HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBLI1HPK70.0I1HPK7_BRADI; Uncharacterized protein
STRINGBRADI2G44050.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP1290245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-49heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]